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Gene Expression Data
Assay Details
Assay
Reference: J:27413 Bulfone A, et al., T-brain-1: a homolog of Brachyury whose expression defines molecularly distinct domains within the cerebral cortex. Neuron. 1995 Jul;15(1):63-78
Assay type: RNA in situ
MGI Accession ID: MGI:4838637
Gene symbol: Tbr1
Gene name: T-box brain transcription factor 1
Probe: Tes-56
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 3f: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: cerebral cortex mantle layer Present Regionally restricted 3f Expression in the mantle zone of the cerebral cortex in postmitotic cells.
TS20: cerebral cortex intermediate zone Present 3f
TS20: cortical plate Present 3f
TS20: telencephalon ventricular layer Absent 3f No expression in the ventricular zone.

Specimen 4e: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 4e Expression in primordia of paleocortex, neocortex and archicortex. Expression in primordia of anterior olfactory nucleus, diagonal band nucleus, eminentia thalami, and bed nucleus of stria medullaris.
TS20: lateral ganglionic eminence Absent 4e
TS20: thalamus Absent 4e No expression in dorsal thalamus.

Specimen 4f: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 4f Expression in primordia of paleocortex, neocortex and archicortex. Expression in primordia of anterior olfactory nucleus and diagonal band nucleus.
TS20: lateral ganglionic eminence Absent 4f
TS20: choroid invagination Absent 4f

Specimen 4g: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 4g Expression in primordia of paleocortex, neocortex and archicortex. Expression in the eminentia thalami.
TS20: lateral ganglionic eminence Absent 4g
TS20: thalamus Absent 4g No expression in dorsal thalamus.

Specimen 4h: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 4h Expression in primordia of paleocortex, neocortex and archicortex. Expression in the bed nucleus of stria medullaris.
TS20: caudal ganglionic eminence Present 4h

Specimen 5c: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: cerebral cortex Present Regionally restricted 5c Expression rostral to a boundary in the superficial zone of the neocortical plate, which shifts caudally in more medial regions of the neocortex.
TS24: cortical plate Present Regionally restricted 5c Expression in the superficial cortical plate is 6-fold greater rostrally than caudally. Expression in deep layers was not significantly different.
TS24: skin Present 5c

Specimen 5d: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: cerebral cortex Present Regionally restricted 5d Expression rostral to a boundary in the superficial zone of the neocortical plate, which shifts caudally in more medial regions of the neocortex.
TS24: skin Present 5d

Specimen not shown: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: thalamus Absent No expression in dorsal thalamus.

Specimen 6e: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cortical plate Present Regionally restricted 6e Expression rostral to a boundary in the superficial zone of the neocortical plate.
TS26: amygdala Present 6e Expression in parts of the the amygdala.
TS26: hippocampus Present Regionally restricted 6e Discontinuity of expression which approximates boundary of hippocampus with subiculum.
TS26: skin Present 6e

Specimen 6f: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cortical plate Present Regionally restricted 6f Expression rostral to a boundary in the superficial zone of the neocortical plate.
TS26: hippocampus Present Regionally restricted 6f Discontinuity of expression which approximates boundary of hippocampus with subiculum.

Specimen 6g: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cortical plate Present Regionally restricted 6g Expression rostral to a boundary in the superficial zone of the neocortical plate.
TS26: cortical subplate Present 6g Expression in a thin layer of cells between the cortical plate and the intermediate zone which may be the subplate.
TS26: amygdala Present Regionally restricted 6g Expression in parts of the the amygdala.
TS26: hippocampus Present Regionally restricted 6g Discontinuity of expression which approximates boundary of hippocampus with subiculum. Expression in subiculum decreases abruptly at the hippocampal primordium.
TS26: thalamus Absent 6g No expression in dorsal thalamus.

Specimen 6h: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cortical plate Present Regionally restricted 6h Expression rostral to a boundary in the superficial zone of the neocortical plate.
TS26: amygdala Present Regionally restricted 6h Expression in parts of the the amygdala.

Specimen not shown: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: cerebral cortex Present Expression rostral to a boundary in the superficial zone of the neocortical plate.

Specimen 7a: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: main olfactory bulb Present Regionally restricted 7a Expression in the olfactory bulb, largely in a single layer that appears to correspond to mitral cells.
TS27: main olfactory bulb mitral cell layer Present 7a Expression in the olfactory bulb, largely in a single layer that appears to correspond to mitral cells.
TS27: nucleus of diagonal band Present Regionally restricted 7a Expression in the vertical limb of the diagonal band.
TS27: deep cerebellar nucleus Present 7a

Specimen 7b: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: anterior olfactory nucleus Present 7b
TS28: telencephalon Present Regionally restricted 7b Expression in a thin strip of cells at the interface of white matter and neocortex; may correspond to the subplate.
TS28: neocortex Present 7b
TS28: cerebral cortex Present Regionally restricted 7b Much less expression in a zone superficial to layer 6 that may correspond to a sublamina of layer 5.
TS28: cortical layer VI Present 7b
TS28: cortical layer V Present Regionally restricted 7b Expression in scattered cells. Thin line of expressing cells becomes much wider.
TS28: hippocampus Present Regionally restricted 7b Attenuation of expression at the boundary of the subiculum with the hippocampus CA1.
TS28: nucleus of diagonal band Present Regionally restricted 7b Expression in the horizontal limb of the diagonal band.
TS28: deep cerebellar nucleus Present 7b
TS28: dorsal thalamus Present 7b

Specimen 7c: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: neocortex Present Regionally restricted 7c
TS28: cortical layer V Present Regionally restricted 7c Expression in scattered cells. Thin line of expressing cells becomes much wider.
TS28: accessory olfactory bulb Present 7c
TS28: anterior olfactory nucleus Present 7c
TS28: entorhinal cortex Present 7c
TS28: nucleus of diagonal band Present Regionally restricted 7c Expression in the vertical limb of the diagonal band.
TS28: hippocampus Present Regionally restricted 7c Attenuation of expression at the boundary of the subiculum with the hippocampus CA1.
TS28: dentate gyrus Strong 7c High levels of expression in hippocampus beginning at approximately CA3 and continuing into the dentate gyrus.
TS28: hippocampus CA3 Strong 7c High levels of expression in hippocampus beginning at approximately CA3 and continuing into the dentate gyrus.
TS28: thalamus Present Regionally restricted 7c Expression nucleus of the stria medullaris.
TS28: dorsal thalamus Present 7c

Specimen not shown: postnatal day 17 (more )
Structure Level Pattern Image Note
TS28: thalamus Weak

Specimen 7d: postnatal adult (more )
Structure Level Pattern Image Note
TS28: endopiriform nucleus Present 7d
TS28: piriform cortex Present 7d
TS28: telencephalon Present Regionally restricted 7d Thin strip of expressing cells between white matter and layer 6 that may correspond to the subplate.
TS28: neocortex Present Regionally restricted 7d
TS28: cortical layer VI Present 7d
TS28: cortical layer IV Weak 7d
TS28: cortical layer V Weak 7d
TS28: cortical layer I Strong 7d
TS28: cortical layer II Strong 7d
TS28: cortical layer III Strong 7d
TS28: claustrum Present 7d
TS28: entorhinal cortex Present 7d
TS28: hippocampus Present 7d
TS28: nucleus of lateral olfactory tract Present 7d
TS28: amygdala Present Regionally restricted 7d Expression in parts of the amygdala.
TS28: cerebellum Purkinje cell layer Present Regionally restricted 7d Expression in Purkinge cells in the lateral cerebellum.

Specimen not shown: postnatal adult (more )
Structure Level Pattern Image Note
TS28: thalamus Weak

Specimen not shown: postnatal (more )
Structure Level Pattern Image Note
TS28: indusium griseum Present
TS28: subiculum Present
TS28: taenia tecta Present
TS28: locus coeruleus Present Regionally restricted Nest of expressing cells in the region of the locus coeruleus.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/16/2024
MGI 6.23
The Jackson Laboratory