Gene Expression Data
Assay Details
Assay
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Reference:
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J:27413
Bulfone A, et al., T-brain-1: a homolog of Brachyury whose expression defines molecularly distinct domains within the cerebral cortex. Neuron. 1995 Jul;15(1):63-78
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:4838637
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Gene symbol:
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Tbr1
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Gene name:
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T-box brain transcription factor 1
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Probe:
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Tes-56
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Probe preparation:
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Antisense labelled with S35 RNA
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Visualized with:
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Autoradiography
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Results
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Specimen
3f:
embryonic day 12.5
(more )
Specimen
3f:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 12.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Specimen
4e:
embryonic day 12.5
(more )
Specimen
4e:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 12.5
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Age Note:
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Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Structure |
Level |
Pattern |
Image |
Note |
TS20: telencephalon |
Present |
Regionally restricted |
4e
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Expression in primordia of paleocortex, neocortex and archicortex. Expression in primordia of anterior olfactory nucleus, diagonal band nucleus, eminentia thalami, and bed nucleus of stria medullaris.
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TS20: lateral ganglionic eminence |
Absent |
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4e
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TS20: thalamus |
Absent |
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4e
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No expression in dorsal thalamus.
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Specimen
4f:
embryonic day 12.5
(more )
Specimen
4f:
(close )
Genetic Background:
|
Not Specified
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Age:
|
embryonic day 12.5
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Age Note:
|
Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Specimen
4g:
embryonic day 12.5
(more )
Specimen
4g:
(close )
Genetic Background:
|
Not Specified
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Age:
|
embryonic day 12.5
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Age Note:
|
Age of embryo at noon of plug day not specified in reference.
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Sex:
|
Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Specimen
4h:
embryonic day 12.5
(more )
Specimen
4h:
(close )
Genetic Background:
|
Not Specified
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Age:
|
embryonic day 12.5
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Age Note:
|
Age of embryo at noon of plug day not specified in reference.
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Sex:
|
Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Specimen
5c:
embryonic day 16.5
(more )
Specimen
5c:
(close )
Genetic Background:
|
Not Specified
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Age:
|
embryonic day 16.5
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Age Note:
|
Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Structure |
Level |
Pattern |
Image |
Note |
TS24: cerebral cortex |
Present |
Regionally restricted |
5c
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Expression rostral to a boundary in the superficial zone of the neocortical plate, which shifts caudally in more medial regions of the neocortex.
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TS24: cortical plate |
Present |
Regionally restricted |
5c
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Expression in the superficial cortical plate is 6-fold greater rostrally than caudally. Expression in deep layers was not significantly different.
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TS24: skin |
Present |
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5c
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Specimen
5d:
embryonic day 16.5
(more )
Specimen
5d:
(close )
Genetic Background:
|
Not Specified
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Age:
|
embryonic day 16.5
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Age Note:
|
Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
|
section
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Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: cerebral cortex |
Present |
Regionally restricted |
5d
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Expression rostral to a boundary in the superficial zone of the neocortical plate, which shifts caudally in more medial regions of the neocortex.
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TS24: skin |
Present |
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5d
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Specimen
not shown:
embryonic day 16.5
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 16.5
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Age Note:
|
Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
|
section
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Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: thalamus |
Absent |
|
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No expression in dorsal thalamus.
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Specimen
6e:
embryonic day 18.5
(more )
Specimen
6e:
(close )
Genetic Background:
|
Not Specified
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Age:
|
embryonic day 18.5
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Age Note:
|
Age of embryo at noon of plug day not specified in reference.
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Structure |
Level |
Pattern |
Image |
Note |
TS26: cortical plate |
Present |
Regionally restricted |
6e
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Expression rostral to a boundary in the superficial zone of the neocortical plate.
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TS26: amygdala |
Present |
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6e
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Expression in parts of the the amygdala.
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TS26: hippocampus |
Present |
Regionally restricted |
6e
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Discontinuity of expression which approximates boundary of hippocampus with subiculum.
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TS26: skin |
Present |
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6e
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Specimen
6f:
embryonic day 18.5
(more )
Specimen
6f:
(close )
Genetic Background:
|
Not Specified
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Age:
|
embryonic day 18.5
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Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
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Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: cortical plate |
Present |
Regionally restricted |
6f
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Expression rostral to a boundary in the superficial zone of the neocortical plate.
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TS26: hippocampus |
Present |
Regionally restricted |
6f
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Discontinuity of expression which approximates boundary of hippocampus with subiculum.
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Specimen
6g:
embryonic day 18.5
(more )
Specimen
6g:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 18.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
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Type:
|
section
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Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: cortical plate |
Present |
Regionally restricted |
6g
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Expression rostral to a boundary in the superficial zone of the neocortical plate.
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TS26: cortical subplate |
Present |
|
6g
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Expression in a thin layer of cells between the cortical plate and the intermediate zone which may be the subplate.
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TS26: amygdala |
Present |
Regionally restricted |
6g
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Expression in parts of the the amygdala.
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TS26: hippocampus |
Present |
Regionally restricted |
6g
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Discontinuity of expression which approximates boundary of hippocampus with subiculum. Expression in subiculum decreases abruptly at the hippocampal primordium.
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TS26: thalamus |
Absent |
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6g
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No expression in dorsal thalamus.
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Specimen
6h:
embryonic day 18.5
(more )
Specimen
6h:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 18.5
|
Age Note:
|
Age of embryo at noon of plug day not specified in reference.
|
Sex:
|
Not Specified
|
Type:
|
section
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Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: cortical plate |
Present |
Regionally restricted |
6h
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Expression rostral to a boundary in the superficial zone of the neocortical plate.
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TS26: amygdala |
Present |
Regionally restricted |
6h
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Expression in parts of the the amygdala.
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Specimen
not shown:
postnatal day 0
(more )
Specimen
not shown:
(close )
Genetic Background:
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Not Specified
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Age:
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postnatal day 0
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Sex:
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Not Specified
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Type:
|
section
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Embedding:
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Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: cerebral cortex |
Present |
|
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Expression rostral to a boundary in the superficial zone of the neocortical plate.
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Specimen
7a:
postnatal day 1
(more )
Specimen
7a:
(close )
Genetic Background:
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Not Specified
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Age:
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postnatal day 1
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Specimen
7b:
postnatal day 7
(more )
Specimen
7b:
(close )
Genetic Background:
|
Not Specified
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Age:
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postnatal day 7
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Specimen
7c:
postnatal day 7
(more )
Specimen
7c:
(close )
Genetic Background:
|
Not Specified
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Age:
|
postnatal day 7
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Sex:
|
Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Specimen
not shown:
postnatal day 17
(more )
Specimen
not shown:
(close )
Genetic Background:
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Not Specified
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Age:
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postnatal day 17
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Specimen
7d:
postnatal adult
(more )
Specimen
7d:
(close )
Genetic Background:
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Not Specified
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Specimen
not shown:
postnatal adult
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
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Age:
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postnatal adult
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Sex:
|
Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Specimen
not shown:
postnatal
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
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Age:
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postnatal
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Sex:
|
Not Specified
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Type:
|
section
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Embedding:
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Cryosection
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