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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4829353
Gene symbol: Zic1
Gene name: zinc finger protein of the cerebellum 1
Probe: T30560
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_010449_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_01
TS23: neural retina Moderate Regionally restricted euxassay_010449_01
Specimen euxassay_010449_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_010449_02
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010449_02
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_02
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_02
TS23: neural retina Moderate Regionally restricted euxassay_010449_02
Specimen euxassay_010449_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_010449_03
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010449_03
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_03
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_03
Specimen euxassay_010449_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_010449_04
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010449_04
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_04
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_04
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_04
Specimen euxassay_010449_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_010449_05
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010449_05
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_010449_05
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_010449_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010449_05
TS23: hippocampus Present euxassay_010449_05
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_05
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_05
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_05
Specimen euxassay_010449_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010449_06
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_010449_06
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_010449_06
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_010449_06
TS23: dorsal grey horn Moderate Regionally restricted euxassay_010449_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010449_06
TS23: hippocampus Present euxassay_010449_06
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_06
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_06
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_06
TS23: spinal cord meninges Moderate Regionally restricted euxassay_010449_06
Specimen euxassay_010449_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010449_07
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_010449_07
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_010449_07
TS23: medulla oblongata basal plate ventricular layer Moderate Single cells euxassay_010449_07
TS23: dorsal grey horn Strong Regionally restricted euxassay_010449_07
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010449_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010449_07
TS23: diencephalon meninges Moderate Regionally restricted euxassay_010449_07
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_07
TS23: spinal cord meninges Moderate Regionally restricted euxassay_010449_07
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_07
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_07
Specimen euxassay_010449_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010449_08
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_010449_08
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_010449_08
TS23: dorsal grey horn Strong Regionally restricted euxassay_010449_08
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010449_08
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_010449_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010449_08
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_08
TS23: diencephalon meninges Moderate Regionally restricted euxassay_010449_08
TS23: spinal cord meninges Moderate Regionally restricted euxassay_010449_08
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_08
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_08
Specimen euxassay_010449_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010449_09
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_010449_09
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_010449_09
TS23: dorsal grey horn Strong Regionally restricted euxassay_010449_09
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010449_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010449_09 roof plate
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_010449_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010449_09
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_09
TS23: diencephalon meninges Moderate Regionally restricted euxassay_010449_09
TS23: spinal cord meninges Moderate Regionally restricted euxassay_010449_09
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_09
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_09
Specimen euxassay_010449_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_010449_10
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010449_10
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_010449_10
TS23: dorsal grey horn Strong Regionally restricted euxassay_010449_10
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010449_10
TS23: thalamus ventricular layer Strong Regionally restricted euxassay_010449_10
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_010449_10 roof plate
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_010449_10
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_010449_10
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_10
TS23: diencephalon meninges Moderate Regionally restricted euxassay_010449_10
TS23: spinal cord meninges Moderate Regionally restricted euxassay_010449_10
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_10
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_10
Specimen euxassay_010449_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010449_11
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_010449_11
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_010449_11
TS23: dorsal grey horn Strong Regionally restricted euxassay_010449_11
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010449_11
TS23: thalamus ventricular layer Strong Regionally restricted euxassay_010449_11
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_010449_11 roof plate
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_010449_11
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_010449_11
TS23: diencephalon meninges Moderate Regionally restricted euxassay_010449_11
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_11
TS23: spinal cord meninges Moderate Regionally restricted euxassay_010449_11
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_11
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_11
Specimen euxassay_010449_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010449_12
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_010449_12
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_010449_12
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_010449_12
TS23: dorsal grey horn Moderate Regionally restricted euxassay_010449_12
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010449_12
TS23: thalamus ventricular layer Strong Regionally restricted euxassay_010449_12
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_010449_12 roof plate
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_010449_12
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_12
TS23: diencephalon meninges Moderate Regionally restricted euxassay_010449_12
TS23: spinal cord meninges Moderate Regionally restricted euxassay_010449_12
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_12
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_12
Specimen euxassay_010449_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010449_13
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_010449_13
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_010449_13
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_010449_13
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010449_13
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_010449_13 roof plate
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_010449_13
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_010449_13
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_13
TS23: diencephalon meninges Moderate Regionally restricted euxassay_010449_13
TS23: spinal cord meninges Moderate Regionally restricted euxassay_010449_13
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_13
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_13
Specimen euxassay_010449_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_010449_14
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010449_14
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_010449_14
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_010449_14
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010449_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_010449_14 roof plate
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_010449_14
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_010449_14
TS23: diencephalon meninges Moderate Regionally restricted euxassay_010449_14
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_14
TS23: spinal cord meninges Moderate Regionally restricted euxassay_010449_14
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_14
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_14
Specimen euxassay_010449_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_010449_15
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010449_15
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_010449_15
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_010449_15
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010449_15
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_010449_15
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_010449_15
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_15
TS23: diencephalon meninges Moderate Regionally restricted euxassay_010449_15
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_15
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_15
Specimen euxassay_010449_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_010449_16
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010449_16
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010449_16
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_010449_16
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_16
TS23: diencephalon meninges Moderate Regionally restricted euxassay_010449_16
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_16
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_16
Specimen euxassay_010449_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_010449_17
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010449_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010449_17
TS23: hippocampus Present euxassay_010449_17
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_17
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_17
TS23: midbrain meninges Moderate Regionally restricted euxassay_010449_17
Specimen euxassay_010449_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_010449_18
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010449_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010449_18
TS23: hippocampus Present euxassay_010449_18
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_18
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_18
Specimen euxassay_010449_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_010449_19
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_010449_19
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010449_19
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_19
TS23: hindbrain meninges Moderate Regionally restricted euxassay_010449_19
Specimen euxassay_010449_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010449_20
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_20
Specimen euxassay_010449_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_21
Specimen euxassay_010449_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_010449_22
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory