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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4829287
Gene symbol: Zfhx3
Gene name: zinc finger homeobox 3
Probe: T45043
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_016590_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_016590_01
TS23: head mesenchyme Moderate Regionally restricted euxassay_016590_01
TS23: cornea Weak Regionally restricted euxassay_016590_01
TS23: interdigital region between hindlimb digits 1 and 2 Moderate Regionally restricted euxassay_016590_01
TS23: interdigital region between hindlimb digits 2 and 3 Moderate Regionally restricted euxassay_016590_01
TS23: interdigital region between hindlimb digits 3 and 4 Moderate Regionally restricted euxassay_016590_01
TS23: interdigital region between hindlimb digits 4 and 5 Moderate Regionally restricted euxassay_016590_01
TS23: exoccipital bone Weak Regionally restricted euxassay_016590_01
TS23: vault of skull Weak Regionally restricted euxassay_016590_01
TS23: orbito-sphenoid Weak Regionally restricted euxassay_016590_01
Specimen euxassay_016590_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_016590_02
TS23: head mesenchyme Moderate Regionally restricted euxassay_016590_02
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_016590_02
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_016590_02
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_016590_02
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_016590_02
TS23: exoccipital bone Weak Regionally restricted euxassay_016590_02
TS23: vault of skull Weak Regionally restricted euxassay_016590_02
TS23: orbito-sphenoid Weak Regionally restricted euxassay_016590_02
Specimen euxassay_016590_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_016590_03
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_016590_03
TS23: head mesenchyme Moderate Regionally restricted euxassay_016590_03
TS23: foot mesenchyme Moderate Regionally restricted euxassay_016590_03
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_016590_03
TS23: exoccipital bone Moderate Regionally restricted euxassay_016590_03
Specimen euxassay_016590_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_016590_04
TS23: facial ganglion Moderate Single cells euxassay_016590_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016590_04
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_016590_04
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_016590_04
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016590_04
Specimen euxassay_016590_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_016590_05
TS23: facial ganglion Moderate Single cells euxassay_016590_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016590_05
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_016590_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016590_05
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_016590_05
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016590_05
Specimen euxassay_016590_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Single cells euxassay_016590_06
TS23: dorsal root ganglion Weak Single cells euxassay_016590_06
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_016590_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016590_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_016590_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_016590_06
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016590_06
Specimen euxassay_016590_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Weak Single cells euxassay_016590_07
TS23: trigeminal ganglion Weak Single cells euxassay_016590_07
TS23: dorsal root ganglion Weak Single cells euxassay_016590_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016590_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016590_07
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_016590_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016590_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_016590_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_016590_07
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016590_07
TS23: cervical ganglion Weak Regionally restricted euxassay_016590_07
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_016590_07
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016590_07
Specimen euxassay_016590_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Single cells euxassay_016590_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016590_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016590_08
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_016590_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016590_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_016590_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_016590_08
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016590_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016590_08
TS23: ventral grey horn Moderate Regionally restricted euxassay_016590_08
TS23: cervical ganglion Weak Regionally restricted euxassay_016590_08
Specimen euxassay_016590_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glans of male genital tubercle Weak Regionally restricted euxassay_016590_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016590_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016590_09
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_016590_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016590_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_016590_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016590_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016590_09
TS23: ventral grey horn Moderate Regionally restricted euxassay_016590_09
Specimen euxassay_016590_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glans of male genital tubercle Weak Regionally restricted euxassay_016590_10
TS23: tail mesenchyme Moderate Regionally restricted euxassay_016590_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016590_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016590_10
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_016590_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016590_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_016590_10
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016590_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016590_10
TS23: ventral grey horn Moderate Regionally restricted euxassay_016590_10
Specimen euxassay_016590_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glans of male genital tubercle Weak Regionally restricted euxassay_016590_11
TS23: tail mesenchyme Moderate Regionally restricted euxassay_016590_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016590_11
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_016590_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016590_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016590_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_016590_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016590_11
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016590_11
TS23: ventral grey horn Weak Regionally restricted euxassay_016590_11
TS23: thoracic ganglion Weak Regionally restricted euxassay_016590_11
TS23: axial skeleton Weak Regionally restricted euxassay_016590_11
TS23: axial skeleton tail region Weak Regionally restricted euxassay_016590_11
Specimen euxassay_016590_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: tail mesenchyme Moderate Regionally restricted euxassay_016590_12
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_016590_12
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_016590_12
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_016590_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016590_12
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016590_12
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016590_12
TS23: ventral grey horn Weak Regionally restricted euxassay_016590_12
TS23: axial skeleton tail region Weak Regionally restricted euxassay_016590_12
TS23: axial skeleton Weak Regionally restricted euxassay_016590_12
Specimen euxassay_016590_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glans of male genital tubercle Weak Regionally restricted euxassay_016590_13
TS23: tail mesenchyme Moderate Regionally restricted euxassay_016590_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016590_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016590_13
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_016590_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016590_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_016590_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016590_13
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016590_13
TS23: ventral grey horn Moderate Regionally restricted euxassay_016590_13
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_016590_13
TS23: axial skeleton tail region Weak Regionally restricted euxassay_016590_13
TS23: axial skeleton Weak Regionally restricted euxassay_016590_13
Specimen euxassay_016590_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: tail mesenchyme Moderate Regionally restricted euxassay_016590_14
TS23: dorsal root ganglion Weak Single cells euxassay_016590_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016590_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016590_14
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_016590_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016590_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_016590_14
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016590_14
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016590_14
TS23: ventral grey horn Weak Regionally restricted euxassay_016590_14
Specimen euxassay_016590_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: tail mesenchyme Weak Regionally restricted euxassay_016590_15
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_016590_15
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_016590_15
Specimen euxassay_016590_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Single cells euxassay_016590_16
TS23: glossopharyngeal ganglion Weak Single cells euxassay_016590_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016590_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016590_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016590_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_016590_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_016590_16
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016590_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016590_16
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016590_16
Specimen euxassay_016590_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_016590_17
TS23: facial ganglion Moderate Single cells euxassay_016590_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016590_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_016590_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_016590_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016590_17
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016590_17
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016590_17
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_016590_17
Specimen euxassay_016590_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Single cells euxassay_016590_18
TS23: facial ganglion Moderate Single cells euxassay_016590_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016590_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016590_18
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_016590_18
TS23: head mesenchyme Moderate Regionally restricted euxassay_016590_18
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_016590_18
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016590_18
Specimen euxassay_016590_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_016590_19
TS23: head mesenchyme Moderate Regionally restricted euxassay_016590_19
TS23: orbito-sphenoid Weak Regionally restricted euxassay_016590_19
TS23: vault of skull Weak Regionally restricted euxassay_016590_19
Specimen euxassay_016590_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_016590_20
TS23: head mesenchyme Moderate Regionally restricted euxassay_016590_20
TS23: hand mesenchyme Moderate Regionally restricted euxassay_016590_20
TS23: exoccipital bone Weak Regionally restricted euxassay_016590_20
TS23: vault of skull Weak Regionally restricted euxassay_016590_20
TS23: orbito-sphenoid Weak Regionally restricted euxassay_016590_20
Specimen euxassay_016590_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_016590_21
TS23: cornea Weak Regionally restricted euxassay_016590_21
TS23: hand mesenchyme Moderate Regionally restricted euxassay_016590_21
TS23: orbito-sphenoid Weak Regionally restricted euxassay_016590_21
TS23: vault of skull Weak Regionally restricted euxassay_016590_21
TS23: exoccipital bone Weak Regionally restricted euxassay_016590_21
Specimen euxassay_016590_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_016590_22
TS23: cornea Weak Regionally restricted euxassay_016590_22
TS23: hand mesenchyme Moderate Regionally restricted euxassay_016590_22
TS23: foot mesenchyme Moderate Regionally restricted euxassay_016590_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory