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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828971
Gene symbol: Tspan9
Gene name: tetraspanin 9
Probe: MGC clone 62968
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006763_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_01
TS23: diaphragm Strong Regionally restricted euxassay_006763_01
TS23: stomach Strong Regionally restricted euxassay_006763_01
TS23: lower leg rest of mesenchyme Strong Regionally restricted euxassay_006763_01
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_01
TS23: hand Strong Regionally restricted euxassay_006763_01
TS23: forearm rest of mesenchyme Strong Regionally restricted euxassay_006763_01
TS23: upper arm muscle Strong Regionally restricted euxassay_006763_01
Specimen euxassay_006763_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_02
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_02
TS23: stomach Strong Regionally restricted euxassay_006763_02
TS23: corpus striatum Moderate Regionally restricted euxassay_006763_02
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_02
TS23: lower leg rest of mesenchyme Strong Regionally restricted euxassay_006763_02
TS23: upper arm muscle Strong Regionally restricted euxassay_006763_02
TS23: hand Strong Regionally restricted euxassay_006763_02
Specimen euxassay_006763_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_03
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_03
TS23: stomach Strong Regionally restricted euxassay_006763_03
TS23: corpus striatum Moderate Regionally restricted euxassay_006763_03
TS23: lower leg rest of mesenchyme Strong Regionally restricted euxassay_006763_03
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_03
TS23: upper arm muscle Strong Regionally restricted euxassay_006763_03
TS23: hand Strong Regionally restricted euxassay_006763_03
Specimen euxassay_006763_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_04
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_04
TS23: stomach Strong Regionally restricted euxassay_006763_04
TS23: eye skeletal muscle Strong Regionally restricted euxassay_006763_04
TS23: corpus striatum Moderate Regionally restricted euxassay_006763_04
TS23: trigeminal ganglion Strong Single cells euxassay_006763_04
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_04
TS23: lower leg rest of mesenchyme Strong Regionally restricted euxassay_006763_04
TS23: upper arm muscle Strong Regionally restricted euxassay_006763_04
Specimen euxassay_006763_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_05
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_05
TS23: stomach Strong Regionally restricted euxassay_006763_05
TS23: eye skeletal muscle Strong Regionally restricted euxassay_006763_05
TS23: corpus striatum Moderate Regionally restricted euxassay_006763_05
TS23: trigeminal ganglion Strong Single cells euxassay_006763_05
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_05
TS23: lower leg rest of mesenchyme Strong Regionally restricted euxassay_006763_05
TS23: foot Strong Regionally restricted euxassay_006763_05
TS23: upper arm muscle Strong Regionally restricted euxassay_006763_05
Specimen euxassay_006763_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_06
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_06
TS23: stomach Strong Regionally restricted euxassay_006763_06
TS23: eye skeletal muscle Strong Regionally restricted euxassay_006763_06
TS23: corpus striatum Moderate Regionally restricted euxassay_006763_06
TS23: pons mantle layer Moderate Single cells euxassay_006763_06
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_006763_06
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_06
TS23: foot Strong Regionally restricted euxassay_006763_06
Specimen euxassay_006763_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_07
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_07
TS23: stomach Strong Regionally restricted euxassay_006763_07
TS23: eye skeletal muscle Strong Regionally restricted euxassay_006763_07
TS23: corpus striatum Moderate Regionally restricted euxassay_006763_07
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_006763_07
TS23: trigeminal ganglion Strong Single cells euxassay_006763_07
TS23: foot Strong Regionally restricted euxassay_006763_07
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_07
Specimen euxassay_006763_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_08
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_08
TS23: stomach Strong Regionally restricted euxassay_006763_08
TS23: eye skeletal muscle Strong Regionally restricted euxassay_006763_08
TS23: esophagus Strong Regionally restricted euxassay_006763_08
TS23: corpus striatum Moderate Regionally restricted euxassay_006763_08
TS23: pons mantle layer Moderate Single cells euxassay_006763_08
TS23: trigeminal ganglion Strong Single cells euxassay_006763_08
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_08
Specimen euxassay_006763_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_09
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_09
TS23: stomach Strong Regionally restricted euxassay_006763_09
TS23: esophagus Strong Regionally restricted euxassay_006763_09
TS23: corpus striatum Moderate Regionally restricted euxassay_006763_09
TS23: pons mantle layer Moderate Single cells euxassay_006763_09
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_006763_09
TS23: trigeminal ganglion Strong Single cells euxassay_006763_09
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_09
Specimen euxassay_006763_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_10
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_10
TS23: tail paraxial mesenchyme Strong Regionally restricted euxassay_006763_10
TS23: stomach Strong Regionally restricted euxassay_006763_10
TS23: midgut loop Strong Regionally restricted euxassay_006763_10
TS23: esophagus Strong Regionally restricted euxassay_006763_10
TS23: pons mantle layer Moderate Single cells euxassay_006763_10
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_006763_10
Specimen euxassay_006763_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_11
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_11
TS23: tongue muscle Strong Regionally restricted euxassay_006763_11
TS23: tail paraxial mesenchyme Strong Regionally restricted euxassay_006763_11
TS23: stomach Strong Regionally restricted euxassay_006763_11
TS23: midgut Strong Regionally restricted euxassay_006763_11
TS23: esophagus Strong Regionally restricted euxassay_006763_11
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_006763_11
Specimen euxassay_006763_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_12
TS23: extraembryonic component Strong Regionally restricted euxassay_006763_12
TS23: tongue muscle Strong Regionally restricted euxassay_006763_12
TS23: tail paraxial mesenchyme Strong Regionally restricted euxassay_006763_12
TS23: midgut Strong Regionally restricted euxassay_006763_12
TS23: esophagus Strong Regionally restricted euxassay_006763_12
TS23: bladder Strong Regionally restricted euxassay_006763_12
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_006763_12
Specimen euxassay_006763_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_13
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_13
TS23: tongue muscle Strong Regionally restricted euxassay_006763_13
TS23: tail paraxial mesenchyme Strong Regionally restricted euxassay_006763_13
TS23: midgut Strong Regionally restricted euxassay_006763_13
TS23: esophagus Strong Regionally restricted euxassay_006763_13
TS23: bladder Strong Regionally restricted euxassay_006763_13
TS23: rectum Strong Regionally restricted euxassay_006763_13
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_006763_13
Specimen euxassay_006763_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_14
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_14
TS23: tongue muscle Strong Regionally restricted euxassay_006763_14
TS23: tail paraxial mesenchyme Strong Regionally restricted euxassay_006763_14
TS23: midgut Strong Regionally restricted euxassay_006763_14
TS23: bladder Strong Regionally restricted euxassay_006763_14
TS23: rectum Strong Regionally restricted euxassay_006763_14
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_006763_14
TS23: pons mantle layer Moderate Single cells euxassay_006763_14
Specimen euxassay_006763_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_15
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_15
TS23: tongue muscle Strong Regionally restricted euxassay_006763_15
TS23: tail paraxial mesenchyme Strong Regionally restricted euxassay_006763_15
TS23: midgut Strong Regionally restricted euxassay_006763_15
TS23: pons mantle layer Moderate Single cells euxassay_006763_15
Specimen euxassay_006763_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_16
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_16
TS23: tongue muscle Strong Regionally restricted euxassay_006763_16
TS23: tail paraxial mesenchyme Strong Regionally restricted euxassay_006763_16
TS23: midgut Strong Regionally restricted euxassay_006763_16
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_006763_16
Specimen euxassay_006763_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_17
TS23: diaphragm Strong Regionally restricted euxassay_006763_17
TS23: tongue muscle Moderate Regionally restricted euxassay_006763_17
TS23: tail paraxial mesenchyme Strong Regionally restricted euxassay_006763_17
TS23: midgut Strong Regionally restricted euxassay_006763_17
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_006763_17
Specimen euxassay_006763_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_18
TS23: diaphragm Strong Regionally restricted euxassay_006763_18
TS23: tail paraxial mesenchyme Strong Regionally restricted euxassay_006763_18
TS23: midgut Strong Regionally restricted euxassay_006763_18
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_006763_18
TS23: trigeminal ganglion Strong Single cells euxassay_006763_18
Specimen euxassay_006763_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_19
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_19
TS23: midgut Strong Regionally restricted euxassay_006763_19
TS23: trigeminal ganglion Strong Single cells euxassay_006763_19
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_19
Specimen euxassay_006763_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_20
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_20
TS23: midgut Strong Regionally restricted euxassay_006763_20
TS23: corpus striatum Moderate Regionally restricted euxassay_006763_20
TS23: trigeminal ganglion Strong Single cells euxassay_006763_20
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_20
Specimen euxassay_006763_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_21
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_21
TS23: corpus striatum Moderate Regionally restricted euxassay_006763_21
TS23: trigeminal ganglion Strong Single cells euxassay_006763_21
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_21
Specimen euxassay_006763_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_22
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_22
TS23: corpus striatum Moderate Regionally restricted euxassay_006763_22
TS23: trigeminal ganglion Strong Single cells euxassay_006763_22
TS23: foot Strong Regionally restricted euxassay_006763_22
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_22
Specimen euxassay_006763_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_23
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_23
TS23: corpus striatum Moderate Regionally restricted euxassay_006763_23
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_23
TS23: lower leg rest of mesenchyme Strong Regionally restricted euxassay_006763_23
TS23: foot Strong Regionally restricted euxassay_006763_23
TS23: upper arm muscle Strong Regionally restricted euxassay_006763_23
Specimen euxassay_006763_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Strong Regionally restricted euxassay_006763_24
TS23: vertebral axis musculature Strong Regionally restricted euxassay_006763_24
TS23: corpus striatum Moderate Regionally restricted euxassay_006763_24
TS23: upper leg muscle Strong Regionally restricted euxassay_006763_24
TS23: lower leg rest of mesenchyme Strong Regionally restricted euxassay_006763_24
TS23: foot Strong Regionally restricted euxassay_006763_24
TS23: hand Strong Regionally restricted euxassay_006763_24
TS23: upper arm muscle Strong Regionally restricted euxassay_006763_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory