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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828862
Gene symbol: Tnr
Gene name: tenascin R
Probe: T38063
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_012507_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_01
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_012507_01
Specimen euxassay_012507_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_02
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_012507_02
Specimen euxassay_012507_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_03
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_012507_03
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012507_03
Specimen euxassay_012507_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_012507_04
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_04
Specimen euxassay_012507_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_012507_05
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_05
TS23: pons mantle layer Weak Regionally restricted euxassay_012507_05
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012507_05
Specimen euxassay_012507_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_012507_06
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_06
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012507_06
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012507_06
TS23: pons mantle layer Weak Regionally restricted euxassay_012507_06
Specimen euxassay_012507_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012507_07
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012507_07
TS23: pons mantle layer Weak Regionally restricted euxassay_012507_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012507_07
Specimen euxassay_012507_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_012507_08
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012507_08
TS23: midbrain tegmentum Moderate Regionally restricted euxassay_012507_08
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012507_08
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012507_08
TS23: pons mantle layer Weak Regionally restricted euxassay_012507_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012507_08
TS23: ventral grey horn Weak Regionally restricted euxassay_012507_08
Specimen euxassay_012507_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_012507_09
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012507_09
TS23: midbrain tegmentum Weak Regionally restricted euxassay_012507_09
TS23: pons mantle layer Weak Regionally restricted euxassay_012507_09
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012507_09
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012507_09
TS23: ventral grey horn Weak Regionally restricted euxassay_012507_09
Specimen euxassay_012507_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_012507_10
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_10
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_012507_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012507_10
TS23: midbrain tegmentum Weak Regionally restricted euxassay_012507_10
TS23: pons mantle layer Weak Regionally restricted euxassay_012507_10
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012507_10
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012507_10
TS23: ventral grey horn Weak Regionally restricted euxassay_012507_10
Specimen euxassay_012507_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_012507_11
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012507_11
TS23: midbrain tegmentum Weak Regionally restricted euxassay_012507_11
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012507_11
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012507_11
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012507_11
TS23: pons mantle layer Weak Regionally restricted euxassay_012507_11
TS23: ventral grey horn Weak Regionally restricted euxassay_012507_11
Specimen euxassay_012507_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_12
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_012507_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012507_12
TS23: midbrain tegmentum Moderate Regionally restricted euxassay_012507_12
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012507_12
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012507_12
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012507_12
TS23: pons mantle layer Weak Regionally restricted euxassay_012507_12
TS23: ventral grey horn Weak Regionally restricted euxassay_012507_12
Specimen euxassay_012507_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012507_13
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012507_13
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012507_13
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012507_13
TS23: pons mantle layer Weak Regionally restricted euxassay_012507_13
TS23: ventral grey horn Moderate Regionally restricted euxassay_012507_13
Specimen euxassay_012507_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012507_14
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_012507_14
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012507_14
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012507_14
TS23: pons mantle layer Weak Regionally restricted euxassay_012507_14
TS23: ventral grey horn Weak Regionally restricted euxassay_012507_14
Specimen euxassay_012507_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_012507_15
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012507_15
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_012507_15
TS23: pons mantle layer Weak Regionally restricted euxassay_012507_15
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012507_15
TS23: ventral grey horn Moderate Regionally restricted euxassay_012507_15
Specimen euxassay_012507_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012507_16
TS23: olfactory cortex mantle layer Moderate Regionally restricted euxassay_012507_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012507_16
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012507_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_012507_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012507_16
Specimen euxassay_012507_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_012507_17
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_012507_17
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012507_17
TS23: pons mantle layer Weak Regionally restricted euxassay_012507_17
Specimen euxassay_012507_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_012507_18
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_012507_18
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_012507_18
Specimen euxassay_012507_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_012507_19
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_012507_19
Specimen euxassay_012507_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_012507_20
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_012507_20
Specimen euxassay_012507_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_012507_21
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_012507_21
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory