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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828575
Gene symbol: Syt9
Gene name: synaptotagmin IX
Probe: T37109
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_011683_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011683_03
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_03
Specimen euxassay_011683_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011683_04
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_011683_04
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_04
Specimen euxassay_011683_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011683_05
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_011683_05
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_011683_05
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_05
Specimen euxassay_011683_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011683_06
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_011683_06
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_011683_06
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_06
Specimen euxassay_011683_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011683_07
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_011683_07
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_07
Specimen euxassay_011683_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011683_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_011683_08
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_08
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011683_08
Specimen euxassay_011683_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_011683_09
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_09
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011683_09
Specimen euxassay_011683_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_10
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011683_10
Specimen euxassay_011683_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_011683_11
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_11
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011683_11
Specimen euxassay_011683_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_011683_12
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_12
TS23: lateral ventricle choroid plexus Weak Regionally restricted euxassay_011683_12
Specimen euxassay_011683_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_011683_13
Specimen euxassay_011683_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_011683_14
Specimen euxassay_011683_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_011683_15
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_011683_15
Specimen euxassay_011683_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_011683_16
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011683_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_011683_16
Specimen euxassay_011683_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_011683_17
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011683_17
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_17
Specimen euxassay_011683_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011683_18
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_18
Specimen euxassay_011683_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011683_19
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_19
Specimen euxassay_011683_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_011683_20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
01/06/2026
MGI 6.24 		The Jackson Laboratory