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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828554
Gene symbol: Syn2
Gene name: synapsin II
Probe: T37105
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_011679_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lens Moderate Single cells euxassay_011679_01
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_011679_01
Specimen euxassay_011679_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lens Strong Single cells euxassay_011679_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_011679_02
Specimen euxassay_011679_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_011679_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_011679_03
Specimen euxassay_011679_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_011679_04
TS23: facial ganglion Moderate Regionally restricted euxassay_011679_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_011679_04
Specimen euxassay_011679_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011679_05
TS23: facial ganglion Weak Regionally restricted euxassay_011679_05
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_011679_05
Specimen euxassay_011679_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_011679_06
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011679_06
TS23: vestibulo-cochlear ganglion Weak Regionally restricted euxassay_011679_06
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_011679_06
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_06
TS23: pons mantle layer Weak Regionally restricted euxassay_011679_06
TS23: midbrain mantle layer Weak Regionally restricted euxassay_011679_06
Specimen euxassay_011679_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_011679_07
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011679_07
TS23: facial ganglion Weak Regionally restricted euxassay_011679_07
TS23: vagus ganglion Weak Regionally restricted euxassay_011679_07
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_011679_07
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_07
TS23: pons mantle layer Weak Regionally restricted euxassay_011679_07
TS23: midbrain mantle layer Weak Regionally restricted euxassay_011679_07
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_011679_07
Specimen euxassay_011679_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011679_08
TS23: vagus ganglion Weak Regionally restricted euxassay_011679_08
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_011679_08
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_08
TS23: pons mantle layer Weak Regionally restricted euxassay_011679_08
TS23: midbrain mantle layer Weak Regionally restricted euxassay_011679_08
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_011679_08
TS23: ventral grey horn Weak Regionally restricted euxassay_011679_08
Specimen euxassay_011679_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011679_09
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_011679_09
TS23: pons mantle layer Weak Regionally restricted euxassay_011679_09
TS23: midbrain mantle layer Weak Regionally restricted euxassay_011679_09
TS23: ventral grey horn Weak Regionally restricted euxassay_011679_09
Specimen euxassay_011679_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal nerve Weak Regionally restricted euxassay_011679_10
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_10
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_011679_10
TS23: pons mantle layer Weak Regionally restricted euxassay_011679_10
TS23: midbrain mantle layer Weak Regionally restricted euxassay_011679_10
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_011679_10
TS23: ventral grey horn Weak Regionally restricted euxassay_011679_10
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_011679_10
Specimen euxassay_011679_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_11
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_011679_11
TS23: pons mantle layer Weak Regionally restricted euxassay_011679_11
TS23: midbrain mantle layer Weak Regionally restricted euxassay_011679_11
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_011679_11
TS23: ventral grey horn Weak Regionally restricted euxassay_011679_11
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_011679_11
Specimen euxassay_011679_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_12
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_011679_12
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_011679_12
TS23: ventral grey horn Weak Regionally restricted euxassay_011679_12
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_011679_12
Specimen euxassay_011679_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_13
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_011679_13
TS23: ventral grey horn Weak Regionally restricted euxassay_011679_13
Specimen euxassay_011679_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_14
TS23: midbrain mantle layer Weak Regionally restricted euxassay_011679_14
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_011679_14
TS23: ventral grey horn Weak Regionally restricted euxassay_011679_14
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_011679_14
Specimen euxassay_011679_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Weak Regionally restricted euxassay_011679_15
TS23: midbrain mantle layer Weak Regionally restricted euxassay_011679_15
TS23: pons mantle layer Weak Regionally restricted euxassay_011679_15
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_011679_15
TS23: ventral grey horn Weak Regionally restricted euxassay_011679_15
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_011679_15
Specimen euxassay_011679_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Weak Regionally restricted euxassay_011679_16
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_011679_16
TS23: pons mantle layer Weak Regionally restricted euxassay_011679_16
TS23: midbrain mantle layer Weak Regionally restricted euxassay_011679_16
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_011679_16
Specimen euxassay_011679_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_011679_17
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011679_17
TS23: trigeminal nerve Weak Regionally restricted euxassay_011679_17
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_011679_17
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_17
TS23: pons mantle layer Weak Regionally restricted euxassay_011679_17
TS23: midbrain mantle layer Weak Regionally restricted euxassay_011679_17
Specimen euxassay_011679_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_011679_18
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_18
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_011679_18
TS23: pons mantle layer Weak Regionally restricted euxassay_011679_18
TS23: midbrain mantle layer Weak Regionally restricted euxassay_011679_18
Specimen euxassay_011679_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_011679_19
TS23: facial ganglion Moderate Regionally restricted euxassay_011679_19
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_19
Specimen euxassay_011679_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_011679_20
TS23: facial ganglion Moderate Regionally restricted euxassay_011679_20
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_20
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_011679_20
Specimen euxassay_011679_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_011679_21
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_011679_21
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_21
Specimen euxassay_011679_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_011679_22
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_22
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_011679_22
Specimen euxassay_011679_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_011679_23
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_011679_23
Specimen euxassay_011679_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011679_24
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_011679_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory