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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828434
Gene symbol: Sptlc3
Gene name: serine palmitoyltransferase, long chain base subunit 3
Probe: IMAGE clone 3483569
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_003401_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_003401_01
TS23: epidermis Strong Regionally restricted euxassay_003401_01
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003401_01
Specimen euxassay_003401_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_003401_02
TS23: epidermis Strong Regionally restricted euxassay_003401_02
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003401_02
Specimen euxassay_003401_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_003401_03
TS23: stomach Moderate Regionally restricted euxassay_003401_03
TS23: vibrissa Weak Regionally restricted euxassay_003401_03
TS23: epidermis Strong Regionally restricted euxassay_003401_03
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003401_03
Specimen euxassay_003401_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_003401_04
TS23: stomach Moderate Regionally restricted euxassay_003401_04
TS23: vibrissa Weak Regionally restricted euxassay_003401_04
TS23: epidermis Strong Regionally restricted euxassay_003401_04
Specimen euxassay_003401_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_003401_05
TS23: stomach Moderate Regionally restricted euxassay_003401_05
TS23: vibrissa Weak Regionally restricted euxassay_003401_05
TS23: epidermis Strong Regionally restricted euxassay_003401_05
Specimen euxassay_003401_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_003401_06
TS23: stomach Moderate Regionally restricted euxassay_003401_06
TS23: vibrissa Weak Regionally restricted euxassay_003401_06
TS23: epidermis Strong Regionally restricted euxassay_003401_06
Specimen euxassay_003401_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_003401_07
TS23: stomach Moderate Regionally restricted euxassay_003401_07
TS23: epidermis Strong Regionally restricted euxassay_003401_07
Specimen euxassay_003401_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_003401_08
TS23: epidermis Strong Regionally restricted euxassay_003401_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003401_08
Specimen euxassay_003401_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003401_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003401_09
TS23: lower jaw incisor Moderate Spotted euxassay_003401_09
Specimen euxassay_003401_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: tongue epithelium Moderate Regionally restricted euxassay_003401_10
TS23: epidermis Strong Regionally restricted euxassay_003401_10
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_003401_10
TS23: naris Moderate Regionally restricted euxassay_003401_10
Specimen euxassay_003401_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Moderate Spotted euxassay_003401_11
TS23: tongue epithelium Moderate Regionally restricted euxassay_003401_11
TS23: epidermis Strong Regionally restricted euxassay_003401_11
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_003401_11
TS23: naris Moderate Regionally restricted euxassay_003401_11
TS23: larynx Moderate Regionally restricted euxassay_003401_11
Specimen euxassay_003401_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Moderate Spotted euxassay_003401_12
TS23: tongue epithelium Moderate Regionally restricted euxassay_003401_12
TS23: epidermis Strong Regionally restricted euxassay_003401_12
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_003401_12
TS23: esophagus Moderate Regionally restricted euxassay_003401_12
TS23: larynx Moderate Regionally restricted euxassay_003401_12
TS23: thyroid cartilage Moderate Regionally restricted euxassay_003401_12
Specimen euxassay_003401_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: urethra Moderate Regionally restricted euxassay_003401_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: thymus primordium Moderate Spotted euxassay_003401_13
TS23: bladder Moderate Regionally restricted euxassay_003401_13
TS23: tongue epithelium Moderate Regionally restricted euxassay_003401_13
TS23: epidermis Strong Regionally restricted euxassay_003401_13
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_003401_13
TS23: trachea Weak Regionally restricted euxassay_003401_13
TS23: larynx Moderate Regionally restricted euxassay_003401_13
Specimen euxassay_003401_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: urethra Moderate Regionally restricted euxassay_003401_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: thymus primordium Moderate Spotted euxassay_003401_14
TS23: bladder Moderate Regionally restricted euxassay_003401_14
TS23: tongue epithelium Moderate Regionally restricted euxassay_003401_14
TS23: epidermis Strong Regionally restricted euxassay_003401_14
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_003401_14
TS23: larynx Moderate Regionally restricted euxassay_003401_14
Specimen euxassay_003401_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: urethra Moderate Regionally restricted euxassay_003401_15 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: thymus primordium Moderate Spotted euxassay_003401_15
TS23: tongue epithelium Moderate Regionally restricted euxassay_003401_15
TS23: epidermis Strong Regionally restricted euxassay_003401_15
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_003401_15
Specimen euxassay_003401_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_003401_16
TS23: tongue epithelium Moderate Regionally restricted euxassay_003401_16
TS23: epidermis Strong Regionally restricted euxassay_003401_16
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003401_16
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_003401_16
TS23: naris Moderate Regionally restricted euxassay_003401_16
Specimen euxassay_003401_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_003401_17
TS23: tongue epithelium Moderate Regionally restricted euxassay_003401_17
TS23: epidermis Strong Regionally restricted euxassay_003401_17
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003401_17
TS23: naris Moderate Regionally restricted euxassay_003401_17
TS23: lower jaw incisor Moderate Spotted euxassay_003401_17
Specimen euxassay_003401_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_003401_18
TS23: epidermis Strong Regionally restricted euxassay_003401_18
TS23: olfactory epithelium Weak Regionally restricted euxassay_003401_18
TS23: lower jaw incisor Weak Spotted euxassay_003401_18
Specimen euxassay_003401_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_003401_19
TS23: epidermis Strong Regionally restricted euxassay_003401_19
Specimen euxassay_003401_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_003401_20
TS23: vibrissa Weak Regionally restricted euxassay_003401_20
TS23: epidermis Strong Regionally restricted euxassay_003401_20
Specimen euxassay_003401_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Weak Regionally restricted euxassay_003401_21
TS23: epidermis Strong Regionally restricted euxassay_003401_21
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003401_21
Specimen euxassay_003401_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Weak Regionally restricted euxassay_003401_22
TS23: vibrissa Weak Regionally restricted euxassay_003401_22
TS23: epidermis Strong Regionally restricted euxassay_003401_22
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003401_22
Specimen euxassay_003401_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003401_23
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003401_23
Specimen euxassay_003401_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003401_24
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003401_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory