About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828348
Gene symbol: Snhg11
Gene name: small nucleolar RNA host gene 11
Probe: T35851
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_009334_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_009334_01
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_01
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_01
Specimen euxassay_009334_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009334_02
TS23: neural retina Strong Regionally restricted euxassay_009334_02
TS23: stomach Moderate Spotted euxassay_009334_02
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_02
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_02
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_02
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_02
Specimen euxassay_009334_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009334_03
TS23: facial ganglion Strong Regionally restricted euxassay_009334_03
TS23: neural retina Strong Regionally restricted euxassay_009334_03
TS23: stomach Moderate Spotted euxassay_009334_03
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_03
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_03
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_03
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_03
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_03
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_03
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_03
Specimen euxassay_009334_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009334_04
TS23: facial ganglion Strong Regionally restricted euxassay_009334_04
TS23: stomach Moderate Spotted euxassay_009334_04
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_04
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_04
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_04
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_04
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_04
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_04
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_04
Specimen euxassay_009334_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009334_05
TS23: facial ganglion Strong Regionally restricted euxassay_009334_05
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_009334_05
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_009334_05
TS23: dorsal root ganglion Strong Regionally restricted euxassay_009334_05
TS23: stomach Moderate Spotted euxassay_009334_05
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_05
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_05
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_05
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009334_05
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_05
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_05
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_05
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_05
Specimen euxassay_009334_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Strong Regionally restricted euxassay_009334_06
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009334_06
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_009334_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_009334_06
TS23: facial ganglion Strong Regionally restricted euxassay_009334_06
TS23: dorsal root ganglion Strong Regionally restricted euxassay_009334_06
TS23: stomach Moderate Spotted euxassay_009334_06
TS23: midgut Moderate Spotted euxassay_009334_06
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_06
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_06
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009334_06
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_06
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_06
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_06
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_06
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_06
Specimen euxassay_009334_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009334_07
TS23: vagus ganglion Strong Regionally restricted euxassay_009334_07
TS23: cervical ganglion Strong Single cells euxassay_009334_07
TS23: dorsal root ganglion Strong Regionally restricted euxassay_009334_07
TS23: stomach Moderate Spotted euxassay_009334_07
TS23: midgut Moderate Spotted euxassay_009334_07
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_07
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_07
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009334_07
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_07
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_07
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_07
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_07
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_07
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_009334_07
Specimen euxassay_009334_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal nerve Strong Regionally restricted euxassay_009334_08
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009334_08
TS23: cervical ganglion Strong Single cells euxassay_009334_08
TS23: cervico-thoracic ganglion Strong Single cells euxassay_009334_08
TS23: thoracic ganglion Strong Single cells euxassay_009334_08
TS23: dorsal root ganglion Strong Regionally restricted euxassay_009334_08
TS23: midgut Moderate Spotted euxassay_009334_08
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_08
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_08
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009334_08
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_08
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_08
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_08
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_08
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_08
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_009334_08
Specimen euxassay_009334_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Strong Single cells euxassay_009334_09
TS23: midgut Moderate Spotted euxassay_009334_09
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009334_09
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_09
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_09
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009334_09
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_09
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_09
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_09
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_09
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_09
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_009334_09
Specimen euxassay_009334_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Strong Single cells euxassay_009334_10
TS23: midgut Moderate Spotted euxassay_009334_10
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009334_10
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_10
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_10
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009334_10
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_10
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_10
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_10
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_10
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_10
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_009334_10
Specimen euxassay_009334_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Strong Single cells euxassay_009334_11
TS23: tongue Strong Spotted euxassay_009334_11
TS23: dorsal root ganglion Strong Regionally restricted euxassay_009334_11
TS23: midgut Moderate Spotted euxassay_009334_11
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_11
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009334_11
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_11
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009334_11
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_11
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_11
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_11
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_11
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_11
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_009334_11
Specimen euxassay_009334_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Strong Single cells euxassay_009334_12
TS23: dorsal root ganglion Strong Regionally restricted euxassay_009334_12
TS23: midgut Moderate Spotted euxassay_009334_12
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_12
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_12
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009334_12
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_12
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_12
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_12
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_12
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_12
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_009334_12
Specimen euxassay_009334_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: tongue Strong Spotted euxassay_009334_13
TS23: dorsal root ganglion Strong Regionally restricted euxassay_009334_13
TS23: midgut Moderate Spotted euxassay_009334_13
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009334_13
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_13
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_13
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009334_13
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_13
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_13
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_13
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_13
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_13
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_009334_13
Specimen euxassay_009334_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cervico-thoracic ganglion Strong Single cells euxassay_009334_14
TS23: dorsal root ganglion Strong Regionally restricted euxassay_009334_14
TS23: midgut Moderate Spotted euxassay_009334_14
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_14
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_14
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009334_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009334_14
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_14
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_14
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_14
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_14
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_14
Specimen euxassay_009334_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal nerve Strong Regionally restricted euxassay_009334_15
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009334_15
TS23: vagus ganglion Strong Regionally restricted euxassay_009334_15
TS23: cervical ganglion Strong Single cells euxassay_009334_15
TS23: dorsal root ganglion Strong Regionally restricted euxassay_009334_15
TS23: midgut Moderate Spotted euxassay_009334_15
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_15
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_15
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009334_15
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009334_15
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_15
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_15
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_15
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_15
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_15
Specimen euxassay_009334_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Strong Regionally restricted euxassay_009334_16
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_009334_16
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009334_16
TS23: trigeminal nerve Strong Regionally restricted euxassay_009334_16
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_009334_16
TS23: dorsal root ganglion Strong Regionally restricted euxassay_009334_16
TS23: midgut Moderate Spotted euxassay_009334_16
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_16
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_16
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009334_16
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009334_16
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_16
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_16
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_16
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_16
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_16
Specimen euxassay_009334_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009334_17
TS23: facial ganglion Strong Regionally restricted euxassay_009334_17
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_009334_17
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_009334_17
TS23: midgut Moderate Spotted euxassay_009334_17
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_17
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_009334_17
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_17
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009334_17
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_009334_17
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_009334_17
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_17
TS23: pons mantle layer Strong Regionally restricted euxassay_009334_17
Specimen euxassay_009334_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009334_18
TS23: facial ganglion Strong Regionally restricted euxassay_009334_18
TS23: midgut Moderate Spotted euxassay_009334_18
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_18
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_18
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_18
Specimen euxassay_009334_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009334_19
TS23: facial ganglion Strong Regionally restricted euxassay_009334_19
TS23: midgut Moderate Spotted euxassay_009334_19
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_19
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_19
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_009334_19
Specimen euxassay_009334_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_009334_20
TS23: neural retina Strong Regionally restricted euxassay_009334_20
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_20
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_20
Specimen euxassay_009334_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_009334_21
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_21
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_21
Specimen euxassay_009334_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_009334_22
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_009334_22
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_009334_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory