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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828304
Gene symbol: Slitrk1
Gene name: SLIT and NTRK-like family, member 1
Probe: T37054
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_012158_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_01
TS23: upper arm mesenchyme Moderate Regionally restricted euxassay_012158_01
TS23: forearm mesenchyme Moderate Regionally restricted euxassay_012158_01
Specimen euxassay_012158_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_02
TS23: upper arm mesenchyme Moderate Regionally restricted euxassay_012158_02
Specimen euxassay_012158_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_03
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012158_03
TS23: facial ganglion Moderate Regionally restricted euxassay_012158_03
TS23: eye skeletal muscle Moderate Regionally restricted euxassay_012158_03
TS23: upper arm mesenchyme Moderate Regionally restricted euxassay_012158_03
TS23: upper leg mesenchyme Moderate Regionally restricted euxassay_012158_03
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_012158_03
Specimen euxassay_012158_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_04
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_04
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_04
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012158_04
TS23: facial ganglion Moderate Regionally restricted euxassay_012158_04
TS23: eye skeletal muscle Moderate Regionally restricted euxassay_012158_04
TS23: rib Moderate Regionally restricted euxassay_012158_04
TS23: upper arm mesenchyme Moderate Regionally restricted euxassay_012158_04
TS23: upper leg mesenchyme Moderate Regionally restricted euxassay_012158_04
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_012158_04
Specimen euxassay_012158_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_05
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_05
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012158_05
TS23: facial ganglion Moderate Regionally restricted euxassay_012158_05
TS23: eye skeletal muscle Moderate Regionally restricted euxassay_012158_05
TS23: rib Moderate Regionally restricted euxassay_012158_05
TS23: upper arm mesenchyme Moderate Regionally restricted euxassay_012158_05
TS23: upper leg mesenchyme Moderate Regionally restricted euxassay_012158_05
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_012158_05
Specimen euxassay_012158_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012158_06
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012158_06
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012158_06
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012158_06
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012158_06
TS23: eye skeletal muscle Moderate Regionally restricted euxassay_012158_06
TS23: submandibular gland primordium mesenchyme Strong Regionally restricted euxassay_012158_06
TS23: rib Moderate Regionally restricted euxassay_012158_06
TS23: axial skeleton Moderate Regionally restricted euxassay_012158_06
Specimen euxassay_012158_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012158_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012158_07
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012158_07
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012158_07
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012158_07
TS23: vagus ganglion Moderate Regionally restricted euxassay_012158_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012158_07
TS23: submandibular gland primordium mesenchyme Strong Regionally restricted euxassay_012158_07
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012158_07
TS23: axial skeleton Moderate Regionally restricted euxassay_012158_07
TS23: rib Moderate Regionally restricted euxassay_012158_07
Specimen euxassay_012158_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012158_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012158_08
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012158_08
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012158_08
TS23: submandibular gland primordium mesenchyme Strong Regionally restricted euxassay_012158_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_012158_08
Specimen euxassay_012158_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012158_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012158_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012158_09
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012158_09
TS23: submandibular gland primordium mesenchyme Strong Regionally restricted euxassay_012158_09
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012158_09
Specimen euxassay_012158_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012158_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012158_10
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012158_10
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012158_10
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012158_10
Specimen euxassay_012158_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012158_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_11
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012158_11
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012158_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012158_11
Specimen euxassay_012158_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012158_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_12
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012158_12
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012158_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012158_12
Specimen euxassay_012158_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012158_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_13
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012158_13
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012158_13
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012158_13
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012158_13
Specimen euxassay_012158_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012158_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012158_14
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012158_14
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012158_14
TS23: submandibular gland primordium mesenchyme Strong Regionally restricted euxassay_012158_14
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012158_14
TS23: axial skeleton Moderate Regionally restricted euxassay_012158_14
Specimen euxassay_012158_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012158_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012158_15
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012158_15
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012158_15
TS23: submandibular gland primordium mesenchyme Strong Regionally restricted euxassay_012158_15
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012158_15
TS23: axial skeleton Moderate Regionally restricted euxassay_012158_15
Specimen euxassay_012158_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012158_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012158_16
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012158_16
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012158_16
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012158_16
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012158_16
TS23: vagus ganglion Moderate Regionally restricted euxassay_012158_16
TS23: submandibular gland primordium mesenchyme Strong Regionally restricted euxassay_012158_16
TS23: dorsal root ganglion Weak Regionally restricted euxassay_012158_16
TS23: axial skeleton Moderate Regionally restricted euxassay_012158_16
Specimen euxassay_012158_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012158_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_17
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012158_17
TS23: facial ganglion Moderate Regionally restricted euxassay_012158_17
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_012158_17
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_012158_17
TS23: submandibular gland primordium mesenchyme Strong Regionally restricted euxassay_012158_17
TS23: axial skeleton Moderate Regionally restricted euxassay_012158_17
TS23: rib Moderate Regionally restricted euxassay_012158_17
Specimen euxassay_012158_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_012158_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_18
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012158_18
TS23: facial ganglion Moderate Regionally restricted euxassay_012158_18
TS23: eye skeletal muscle Moderate Regionally restricted euxassay_012158_18
TS23: rib Moderate Regionally restricted euxassay_012158_18
TS23: upper leg mesenchyme Moderate Regionally restricted euxassay_012158_18
Specimen euxassay_012158_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_19
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_012158_19
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_19
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_19
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012158_19
TS23: facial ganglion Moderate Regionally restricted euxassay_012158_19
TS23: eye skeletal muscle Moderate Regionally restricted euxassay_012158_19
TS23: rib Moderate Regionally restricted euxassay_012158_19
TS23: upper leg mesenchyme Moderate Regionally restricted euxassay_012158_19
Specimen euxassay_012158_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_20
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012158_20
TS23: pons mantle layer Moderate Regionally restricted euxassay_012158_20
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012158_20
TS23: facial ganglion Moderate Regionally restricted euxassay_012158_20
TS23: eye skeletal muscle Moderate Regionally restricted euxassay_012158_20
TS23: rib Moderate Regionally restricted euxassay_012158_20
TS23: upper leg mesenchyme Moderate Regionally restricted euxassay_012158_20
Specimen euxassay_012158_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_21
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012158_21
TS23: eye skeletal muscle Moderate Regionally restricted euxassay_012158_21
TS23: rib Moderate Regionally restricted euxassay_012158_21
TS23: upper leg mesenchyme Moderate Regionally restricted euxassay_012158_21
Specimen euxassay_012158_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_22
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_012158_22
TS23: eye skeletal muscle Moderate Regionally restricted euxassay_012158_22
TS23: rib Moderate Regionally restricted euxassay_012158_22
TS23: forearm mesenchyme Moderate Regionally restricted euxassay_012158_22
TS23: upper arm mesenchyme Moderate Regionally restricted euxassay_012158_22
TS23: upper leg mesenchyme Moderate Regionally restricted euxassay_012158_22
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_012158_22
Specimen euxassay_012158_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_012158_23
TS23: upper arm mesenchyme Moderate Regionally restricted euxassay_012158_23
TS23: forearm mesenchyme Moderate Regionally restricted euxassay_012158_23
TS23: upper leg mesenchyme Moderate Regionally restricted euxassay_012158_23
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_012158_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory