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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828296
Gene symbol: Slco1c1
Gene name: solute carrier organic anion transporter family, member 1c1
Probe: MGC clone 90655
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: blood vessel Strong Regionally restricted Expression is present in the vasculature of the brain.
TS23: choroid plexus Strong
TS23: brain meninges Moderate
Specimen euxassay_007061_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_007061_01
TS23: telencephalon meninges Strong Regionally restricted euxassay_007061_01
TS23: forebrain Strong Regionally restricted euxassay_007061_01
Specimen euxassay_007061_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_02
TS23: choroid plexus Present euxassay_007061_02
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_007061_02
TS23: telencephalon meninges Strong Regionally restricted euxassay_007061_02
TS23: forebrain Strong Regionally restricted euxassay_007061_02
TS23: hindbrain Strong Regionally restricted euxassay_007061_02
Specimen euxassay_007061_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_03
TS23: choroid plexus Present euxassay_007061_03
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_007061_03
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_03
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_03
TS23: forebrain Strong Regionally restricted euxassay_007061_03
TS23: hindbrain Strong Regionally restricted euxassay_007061_03
Specimen euxassay_007061_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_04
TS23: choroid plexus Present euxassay_007061_04
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_04
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_007061_04
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_04
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_04
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_04
TS23: forebrain Strong Regionally restricted euxassay_007061_04
TS23: hindbrain Strong Regionally restricted euxassay_007061_04
TS23: midbrain Strong Regionally restricted euxassay_007061_04
Specimen euxassay_007061_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_05
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_05
TS23: choroid plexus Present euxassay_007061_05
TS23: olfactory cortex ventricular layer Weak Regionally restricted euxassay_007061_05
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_05
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_05
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_05
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_05
TS23: forebrain Strong Regionally restricted euxassay_007061_05
TS23: hindbrain Strong Regionally restricted euxassay_007061_05
TS23: midbrain Strong Regionally restricted euxassay_007061_05
Specimen euxassay_007061_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_06
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_06
TS23: choroid plexus Present euxassay_007061_06
TS23: olfactory cortex ventricular layer Weak Regionally restricted euxassay_007061_06
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_06
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_06
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_06
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_06
TS23: forebrain Strong Regionally restricted euxassay_007061_06
TS23: hindbrain Strong Regionally restricted euxassay_007061_06
TS23: midbrain Strong Regionally restricted euxassay_007061_06
Specimen euxassay_007061_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_07
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_07
TS23: choroid plexus Present euxassay_007061_07
TS23: olfactory cortex ventricular layer Weak Regionally restricted euxassay_007061_07
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_07
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_07
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_07
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_07
TS23: forebrain Strong Regionally restricted euxassay_007061_07
TS23: hindbrain Strong Regionally restricted euxassay_007061_07
TS23: midbrain Strong Regionally restricted euxassay_007061_07
Specimen euxassay_007061_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_08
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_08
TS23: choroid plexus Present euxassay_007061_08
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_007061_08
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_08
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_08
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_08
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_08
TS23: forebrain Strong Regionally restricted euxassay_007061_08
TS23: hindbrain Strong Regionally restricted euxassay_007061_08
TS23: midbrain Strong Regionally restricted euxassay_007061_08
Specimen euxassay_007061_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_09
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_09
TS23: choroid plexus Present euxassay_007061_09
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_007061_09
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_09
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_09
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_09
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_09
TS23: forebrain Strong Regionally restricted euxassay_007061_09
TS23: hindbrain Strong Regionally restricted euxassay_007061_09
TS23: midbrain Strong Regionally restricted euxassay_007061_09
Specimen euxassay_007061_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_10
TS23: choroid plexus Present euxassay_007061_10
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_10
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_10
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_10
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_10
TS23: forebrain Strong Regionally restricted euxassay_007061_10
TS23: hindbrain Strong Regionally restricted euxassay_007061_10
TS23: midbrain Strong Regionally restricted euxassay_007061_10
Specimen euxassay_007061_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_11
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_11
TS23: choroid plexus Present euxassay_007061_11
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_11
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_11
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_11
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_11
TS23: spinal cord meninges Moderate Regionally restricted euxassay_007061_11
TS23: forebrain Strong Regionally restricted euxassay_007061_11
TS23: hindbrain Strong Regionally restricted euxassay_007061_11
TS23: midbrain Strong Regionally restricted euxassay_007061_11
Specimen euxassay_007061_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_12
TS23: choroid plexus Present euxassay_007061_12
TS23: lateral ventricle choroid plexus Moderate Regionally restricted euxassay_007061_12
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_12
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_12
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_12
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_12
TS23: spinal cord meninges Moderate Regionally restricted euxassay_007061_12
TS23: forebrain Strong Regionally restricted euxassay_007061_12
TS23: hindbrain Strong Regionally restricted euxassay_007061_12
TS23: midbrain Strong Regionally restricted euxassay_007061_12
TS23: spinal cord Strong Regionally restricted euxassay_007061_12
Specimen euxassay_007061_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_13
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_13
TS23: choroid plexus Present euxassay_007061_13
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_007061_13
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_13
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_13
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_13
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_13
TS23: spinal cord meninges Moderate Regionally restricted euxassay_007061_13
TS23: forebrain Strong Regionally restricted euxassay_007061_13
TS23: hindbrain Strong Regionally restricted euxassay_007061_13
TS23: midbrain Strong Regionally restricted euxassay_007061_13
TS23: spinal cord Strong Regionally restricted euxassay_007061_13
Specimen euxassay_007061_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_14
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_14
TS23: choroid plexus Present euxassay_007061_14
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_007061_14
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_14
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_14
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_14
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_14
TS23: spinal cord meninges Moderate Regionally restricted euxassay_007061_14
TS23: forebrain Strong Regionally restricted euxassay_007061_14
TS23: hindbrain Strong Regionally restricted euxassay_007061_14
TS23: midbrain Strong Regionally restricted euxassay_007061_14
TS23: spinal cord Strong Regionally restricted euxassay_007061_14
Specimen euxassay_007061_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_15
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_15
TS23: choroid plexus Present euxassay_007061_15
TS23: olfactory cortex ventricular layer Weak Regionally restricted euxassay_007061_15
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_15
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_15
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_15
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_15
TS23: spinal cord meninges Moderate Regionally restricted euxassay_007061_15
TS23: forebrain Strong Regionally restricted euxassay_007061_15
TS23: hindbrain Strong Regionally restricted euxassay_007061_15
TS23: midbrain Strong Regionally restricted euxassay_007061_15
TS23: spinal cord Strong Regionally restricted euxassay_007061_15
Specimen euxassay_007061_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_16
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_16
TS23: choroid plexus Present euxassay_007061_16
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_007061_16
TS23: spinal cord meninges Moderate Regionally restricted euxassay_007061_16
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_16
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_16
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_16
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_16
TS23: forebrain Strong Regionally restricted euxassay_007061_16
TS23: hindbrain Strong Regionally restricted euxassay_007061_16
TS23: midbrain Strong Regionally restricted euxassay_007061_16
TS23: spinal cord Strong Regionally restricted euxassay_007061_16
Specimen euxassay_007061_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_17
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_17
TS23: choroid plexus Present euxassay_007061_17
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007061_17
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_17
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_17
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_17
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_17
TS23: spinal cord meninges Moderate Regionally restricted euxassay_007061_17
TS23: forebrain Strong Regionally restricted euxassay_007061_17
TS23: hindbrain Strong Regionally restricted euxassay_007061_17
TS23: midbrain Strong Regionally restricted euxassay_007061_17
TS23: spinal cord Strong Regionally restricted euxassay_007061_17
Specimen euxassay_007061_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_18
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_18
TS23: choroid plexus Present euxassay_007061_18
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007061_18
TS23: diencephalon meninges Moderate Regionally restricted euxassay_007061_18
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_18
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_18
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_18
TS23: spinal cord meninges Moderate Regionally restricted euxassay_007061_18
TS23: forebrain Strong Regionally restricted euxassay_007061_18
TS23: hindbrain Strong Regionally restricted euxassay_007061_18
TS23: midbrain Strong Regionally restricted euxassay_007061_18
TS23: spinal cord Strong Regionally restricted euxassay_007061_18
Specimen euxassay_007061_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Strong Regionally restricted euxassay_007061_19
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_19
TS23: choroid plexus Present euxassay_007061_19
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007061_19
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_19
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_19
TS23: spinal cord meninges Moderate Regionally restricted euxassay_007061_19
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_19
TS23: forebrain Strong Regionally restricted euxassay_007061_19
TS23: hindbrain Strong Regionally restricted euxassay_007061_19
TS23: midbrain Strong Regionally restricted euxassay_007061_19
TS23: spinal cord Strong Regionally restricted euxassay_007061_19
Specimen euxassay_007061_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_20
TS23: choroid plexus Present euxassay_007061_20
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007061_20
TS23: midbrain meninges Moderate Regionally restricted euxassay_007061_20
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_20
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_20
TS23: forebrain Strong Regionally restricted euxassay_007061_20
TS23: hindbrain Strong Regionally restricted euxassay_007061_20
TS23: midbrain Strong Regionally restricted euxassay_007061_20
Specimen euxassay_007061_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_21
TS23: choroid plexus Present euxassay_007061_21
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007061_21
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_21
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_21
TS23: forebrain Strong Regionally restricted euxassay_007061_21
TS23: hindbrain Strong Regionally restricted euxassay_007061_21
Specimen euxassay_007061_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_22
TS23: choroid plexus Present euxassay_007061_22
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007061_22
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_22
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_22
TS23: forebrain Strong Regionally restricted euxassay_007061_22
TS23: hindbrain Strong Regionally restricted euxassay_007061_22
Specimen euxassay_007061_23: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: 4th ventricle Strong Regionally restricted euxassay_007061_23
TS23: choroid plexus Present euxassay_007061_23
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_23
TS23: hindbrain meninges Moderate Regionally restricted euxassay_007061_23
TS23: forebrain Strong Regionally restricted euxassay_007061_23
Specimen euxassay_007061_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_007061_24
TS23: forebrain Strong Regionally restricted euxassay_007061_24
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory