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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828271
Gene symbol: Slc7a1
Gene name: solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
Probe: T37042
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: blood vessel Strong Regionally restricted Expression is present in the vasculature of the brain.
TS23: brain meninges Strong
Specimen euxassay_012248_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_03
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_03
Specimen euxassay_012248_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_04
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_04
TS23: mandible Weak Regionally restricted euxassay_012248_04
TS23: temporal bone Weak Regionally restricted euxassay_012248_04
Specimen euxassay_012248_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_05
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_05
TS23: vibrissa Moderate Regionally restricted euxassay_012248_05
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_05
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_05
TS23: mandible Weak Regionally restricted euxassay_012248_05
TS23: orbito-sphenoid Weak Regionally restricted euxassay_012248_05
TS23: temporal bone Weak Regionally restricted euxassay_012248_05
Specimen euxassay_012248_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_06
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_06
TS23: vibrissa Moderate Regionally restricted euxassay_012248_06
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_06
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_06
TS23: orbito-sphenoid Weak Regionally restricted euxassay_012248_06
TS23: temporal bone Weak Regionally restricted euxassay_012248_06
Specimen euxassay_012248_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_07
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_07
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_07
TS23: adrenal gland Moderate Regionally restricted euxassay_012248_07
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_07
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_07
TS23: pons mantle layer Strong Spotted euxassay_012248_07
TS23: upper jaw molar Weak Regionally restricted euxassay_012248_07
TS23: lower jaw molar Weak Regionally restricted euxassay_012248_07
Specimen euxassay_012248_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_08
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_08
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_08
TS23: diencephalon meninges Strong Regionally restricted euxassay_012248_08
TS23: adrenal gland Moderate Regionally restricted euxassay_012248_08
TS23: midbrain mantle layer Strong Spotted euxassay_012248_08
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_08
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_08
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_012248_08
TS23: pons mantle layer Strong Spotted euxassay_012248_08
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_012248_08
TS23: medulla oblongata alar plate mantle layer Strong Spotted euxassay_012248_08
TS23: submandibular gland primordium Weak Regionally restricted euxassay_012248_08
Specimen euxassay_012248_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_09
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_09
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_09
TS23: diencephalon meninges Strong Regionally restricted euxassay_012248_09
TS23: adrenal gland Moderate Regionally restricted euxassay_012248_09
TS23: midbrain mantle layer Strong Spotted euxassay_012248_09
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_09
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_09
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_012248_09
TS23: pons mantle layer Strong Spotted euxassay_012248_09
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_012248_09
TS23: medulla oblongata alar plate mantle layer Strong Spotted euxassay_012248_09
TS23: upper jaw molar Weak Regionally restricted euxassay_012248_09
TS23: submandibular gland primordium Weak Regionally restricted euxassay_012248_09
Specimen euxassay_012248_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_10
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_10
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_10
TS23: diencephalon meninges Strong Regionally restricted euxassay_012248_10
TS23: spinal cord meninges Strong Regionally restricted euxassay_012248_10
TS23: adrenal gland Moderate Regionally restricted euxassay_012248_10
TS23: midbrain mantle layer Strong Spotted euxassay_012248_10
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_10
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_10
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_012248_10
TS23: pons mantle layer Strong Spotted euxassay_012248_10
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_012248_10
TS23: medulla oblongata alar plate mantle layer Strong Spotted euxassay_012248_10
TS23: spinal cord mantle layer Strong Spotted euxassay_012248_10
TS23: submandibular gland primordium Weak Regionally restricted euxassay_012248_10
Specimen euxassay_012248_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_012248_11
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_11
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_11
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_11
TS23: diencephalon meninges Strong Regionally restricted euxassay_012248_11
TS23: midbrain mantle layer Strong Spotted euxassay_012248_11
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_11
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_11
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_012248_11
TS23: spinal cord mantle layer Strong Spotted euxassay_012248_11
TS23: pons mantle layer Strong Spotted euxassay_012248_11
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_012248_11
TS23: medulla oblongata alar plate mantle layer Strong Spotted euxassay_012248_11
TS23: lower jaw incisor Weak Regionally restricted euxassay_012248_11
TS23: upper jaw incisor Weak Regionally restricted euxassay_012248_11
Specimen euxassay_012248_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_012248_12
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_12
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_12
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_12
TS23: midbrain mantle layer Strong Spotted euxassay_012248_12
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_12
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_12
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_012248_12
TS23: spinal cord mantle layer Strong Spotted euxassay_012248_12
TS23: pons mantle layer Strong Spotted euxassay_012248_12
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_012248_12
TS23: medulla oblongata alar plate mantle layer Strong Spotted euxassay_012248_12
TS23: lower jaw incisor Weak Regionally restricted euxassay_012248_12
Specimen euxassay_012248_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Moderate Regionally restricted euxassay_012248_13
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_13
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_13
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_13
TS23: diencephalon meninges Strong Regionally restricted euxassay_012248_13
TS23: midbrain mantle layer Strong Spotted euxassay_012248_13
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_13
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_13
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_012248_13
TS23: spinal cord mantle layer Strong Spotted euxassay_012248_13
TS23: pons mantle layer Strong Spotted euxassay_012248_13
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_012248_13
TS23: medulla oblongata alar plate mantle layer Strong Spotted euxassay_012248_13
Specimen euxassay_012248_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Moderate Regionally restricted euxassay_012248_14
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_14
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_14
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_14
TS23: diencephalon meninges Strong Regionally restricted euxassay_012248_14
TS23: midbrain mantle layer Strong Spotted euxassay_012248_14
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_14
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_14
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_012248_14
TS23: spinal cord mantle layer Strong Spotted euxassay_012248_14
TS23: pons mantle layer Strong Spotted euxassay_012248_14
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_012248_14
TS23: medulla oblongata alar plate mantle layer Strong Spotted euxassay_012248_14
Specimen euxassay_012248_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_012248_15
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_15
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_15
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_15
TS23: diencephalon meninges Strong Regionally restricted euxassay_012248_15
TS23: midbrain mantle layer Strong Spotted euxassay_012248_15
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_15
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_15
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_012248_15
TS23: spinal cord mantle layer Strong Spotted euxassay_012248_15
TS23: pons mantle layer Strong Spotted euxassay_012248_15
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_012248_15
TS23: medulla oblongata alar plate mantle layer Strong Spotted euxassay_012248_15
TS23: lower jaw incisor Weak Regionally restricted euxassay_012248_15
TS23: upper jaw incisor Weak Regionally restricted euxassay_012248_15
Specimen euxassay_012248_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_012248_16
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_16
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_16
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_16
TS23: diencephalon meninges Strong Regionally restricted euxassay_012248_16
TS23: adrenal gland Weak Regionally restricted euxassay_012248_16
TS23: midbrain mantle layer Strong Spotted euxassay_012248_16
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_16
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_16
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_012248_16
TS23: spinal cord mantle layer Strong Spotted euxassay_012248_16
TS23: pons mantle layer Strong Spotted euxassay_012248_16
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_012248_16
TS23: upper jaw incisor Weak Regionally restricted euxassay_012248_16
TS23: submandibular gland primordium Weak Regionally restricted euxassay_012248_16
Specimen euxassay_012248_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_012248_17
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_17
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_17
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_17
TS23: diencephalon meninges Strong Regionally restricted euxassay_012248_17
TS23: adrenal gland Weak Regionally restricted euxassay_012248_17
TS23: midbrain mantle layer Strong Spotted euxassay_012248_17
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_17
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_17
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_012248_17
TS23: spinal cord mantle layer Strong Spotted euxassay_012248_17
TS23: pons mantle layer Strong Spotted euxassay_012248_17
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_012248_17
TS23: medulla oblongata alar plate mantle layer Strong Spotted euxassay_012248_17
TS23: turbinate bone primordium Weak Regionally restricted euxassay_012248_17
TS23: submandibular gland primordium Weak Regionally restricted euxassay_012248_17
Specimen euxassay_012248_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_18
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_18
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_18
TS23: diencephalon meninges Strong Regionally restricted euxassay_012248_18
TS23: adrenal gland Weak Regionally restricted euxassay_012248_18
TS23: midbrain mantle layer Strong Spotted euxassay_012248_18
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_18
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_18
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_012248_18
TS23: pons mantle layer Strong Spotted euxassay_012248_18
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_012248_18
TS23: medulla oblongata alar plate mantle layer Strong Spotted euxassay_012248_18
TS23: upper jaw molar Weak Regionally restricted euxassay_012248_18
TS23: lower jaw molar Weak Regionally restricted euxassay_012248_18
TS23: turbinate bone primordium Weak Regionally restricted euxassay_012248_18
TS23: submandibular gland primordium Weak Regionally restricted euxassay_012248_18
Specimen euxassay_012248_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_19
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_19
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_19
TS23: diencephalon meninges Strong Regionally restricted euxassay_012248_19
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_012248_19
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_19
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_19
TS23: midbrain mantle layer Strong Spotted euxassay_012248_19
TS23: pons mantle layer Strong Spotted euxassay_012248_19
TS23: medulla oblongata basal plate mantle layer Strong Spotted euxassay_012248_19
TS23: medulla oblongata alar plate mantle layer Strong Spotted euxassay_012248_19
TS23: orbito-sphenoid Weak Regionally restricted euxassay_012248_19
TS23: turbinate bone primordium Weak Regionally restricted euxassay_012248_19
TS23: submandibular gland primordium Weak Regionally restricted euxassay_012248_19
Specimen euxassay_012248_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_20
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_20
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_20
TS23: diencephalon meninges Strong Regionally restricted euxassay_012248_20
TS23: vibrissa Moderate Regionally restricted euxassay_012248_20
TS23: midbrain mantle layer Strong Spotted euxassay_012248_20
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_20
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_20
TS23: diencephalon lateral wall mantle layer Strong Spotted euxassay_012248_20
TS23: pons mantle layer Strong Spotted euxassay_012248_20
TS23: medulla oblongata alar plate mantle layer Strong Spotted euxassay_012248_20
TS23: upper jaw molar Weak Regionally restricted euxassay_012248_20
TS23: lower jaw molar Weak Regionally restricted euxassay_012248_20
Specimen euxassay_012248_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_21
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_21
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_21
TS23: vibrissa Moderate Regionally restricted euxassay_012248_21
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_21
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_21
TS23: midbrain mantle layer Strong Spotted euxassay_012248_21
TS23: pons mantle layer Strong Spotted euxassay_012248_21
TS23: orbito-sphenoid Weak Regionally restricted euxassay_012248_21
TS23: temporal bone Weak Regionally restricted euxassay_012248_21
Specimen euxassay_012248_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_012248_22
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_22
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_22
TS23: vibrissa Moderate Regionally restricted euxassay_012248_22
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_22
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_22
TS23: mandible Weak Regionally restricted euxassay_012248_22
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_012248_22
TS23: temporal bone Weak Regionally restricted euxassay_012248_22
Specimen euxassay_012248_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain meninges Strong Regionally restricted euxassay_012248_23
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_23
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_23
TS23: rest of cerebellum mantle layer Strong Spotted euxassay_012248_23
TS23: mandible Weak Regionally restricted euxassay_012248_23
TS23: orbito-sphenoid Weak Regionally restricted euxassay_012248_23
TS23: temporal bone Weak Regionally restricted euxassay_012248_23
Specimen euxassay_012248_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_012248_24
TS23: telencephalon mantle layer Strong Spotted euxassay_012248_24
TS23: mandible Weak Regionally restricted euxassay_012248_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory