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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828266
Gene symbol: Slc6a5
Gene name: solute carrier family 6 (neurotransmitter transporter, glycine), member 5
Probe: T37041
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; it is possible another gene-specific probe was used.
Structure Level Pattern Image Note
TS23: midbrain Weak
TS23: cerebellum Moderate
TS23: pons Strong
TS23: medulla oblongata Strong
Specimen euxassay_012148_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_06
Specimen euxassay_012148_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_07
TS23: medulla oblongata alar plate marginal layer Moderate Regionally restricted euxassay_012148_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012148_07
Specimen euxassay_012148_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate marginal layer Moderate Regionally restricted euxassay_012148_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012148_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_08
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012148_08
Specimen euxassay_012148_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012148_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012148_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_09
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012148_09
TS23: midbrain tegmentum Moderate Regionally restricted euxassay_012148_09
Specimen euxassay_012148_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012148_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012148_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_10
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012148_10
TS23: midbrain tegmentum Moderate Regionally restricted euxassay_012148_10
Specimen euxassay_012148_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012148_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012148_11
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012148_11
Specimen euxassay_012148_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012148_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012148_12
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012148_12
Specimen euxassay_012148_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012148_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012148_13
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_13
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012148_13
Specimen euxassay_012148_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012148_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012148_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_14
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_012148_14
Specimen euxassay_012148_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012148_15
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012148_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_15
Specimen euxassay_012148_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012148_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012148_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_16
TS23: midbrain tegmentum Moderate Regionally restricted euxassay_012148_16
Specimen euxassay_012148_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012148_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012148_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_17
TS23: midbrain tegmentum Moderate Regionally restricted euxassay_012148_17
Specimen euxassay_012148_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012148_18
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012148_18
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_18
Specimen euxassay_012148_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_012148_19
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_012148_19
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_19
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_19
Specimen euxassay_012148_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_012148_20
TS23: pons mantle layer Moderate Regionally restricted euxassay_012148_20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory