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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828235
Gene symbol: Slc44a5
Gene name: solute carrier family 44, member 5
Probe: T56048
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: cerebral cortex Weak
TS23: cerebellum Moderate
TS23: midbrain Moderate
TS23: thalamus Moderate
TS23: pons Strong
TS23: medulla oblongata Weak
Specimen euxassay_019725_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019725_02
Specimen euxassay_019725_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019725_03
Specimen euxassay_019725_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019725_04
TS23: cerebral cortex ventricular layer Weak Regionally restricted euxassay_019725_04
Specimen euxassay_019725_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019725_05
TS23: cerebral cortex ventricular layer Moderate Regionally restricted euxassay_019725_05
Specimen euxassay_019725_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019725_06
TS23: cerebral cortex ventricular layer Moderate Regionally restricted euxassay_019725_06
Specimen euxassay_019725_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019725_07
TS23: cerebral cortex ventricular layer Moderate Regionally restricted euxassay_019725_07
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_019725_07
Specimen euxassay_019725_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Weak Regionally restricted euxassay_019725_08
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019725_08
TS23: midbrain mantle layer Weak Regionally restricted euxassay_019725_08
TS23: pons mantle layer Weak Regionally restricted euxassay_019725_08 trigeminal motor nucleus
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_019725_08
Specimen euxassay_019725_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Weak Regionally restricted euxassay_019725_09
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019725_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019725_09
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_019725_09
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_019725_09
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019725_09 facial motor nucleus
TS23: pons mantle layer Weak Regionally restricted euxassay_019725_09 trigeminal motor nucleus
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_019725_09
TS23: upper lip Weak Regionally restricted euxassay_019725_09
TS23: lower lip Weak Regionally restricted euxassay_019725_09
Specimen euxassay_019725_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Weak Regionally restricted euxassay_019725_10
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019725_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019725_10
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019725_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019725_10
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019725_10 facial motor nucleus
TS23: upper lip Weak Regionally restricted euxassay_019725_10
TS23: lower lip Weak Regionally restricted euxassay_019725_10
Specimen euxassay_019725_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019725_11
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_019725_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019725_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019725_11
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019725_11 facial motor nucleus
TS23: ventral grey horn Moderate Regionally restricted euxassay_019725_11
TS23: upper lip Weak Regionally restricted euxassay_019725_11
TS23: lower lip Weak Regionally restricted euxassay_019725_11
Specimen euxassay_019725_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019725_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019725_12
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019725_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019725_12
TS23: ventral grey horn Moderate Regionally restricted euxassay_019725_12
TS23: upper lip Weak Regionally restricted euxassay_019725_12
TS23: lower lip Weak Regionally restricted euxassay_019725_12
TS23: metencephalon floor plate Moderate Regionally restricted euxassay_019725_12
Specimen euxassay_019725_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019725_13
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019725_13
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019725_13
TS23: ventral grey horn Moderate Regionally restricted euxassay_019725_13
TS23: metencephalon floor plate Moderate Regionally restricted euxassay_019725_13
TS23: medulla oblongata floor plate Moderate Regionally restricted euxassay_019725_13
Specimen euxassay_019725_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Moderate Regionally restricted euxassay_019725_14
Specimen euxassay_019725_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019725_15
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019725_15
TS23: ventral grey horn Moderate Regionally restricted euxassay_019725_15
TS23: trachea Weak Regionally restricted euxassay_019725_15
Specimen euxassay_019725_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019725_16
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019725_16
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_019725_16
TS23: ventral grey horn Moderate Regionally restricted euxassay_019725_16
Specimen euxassay_019725_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019725_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019725_17
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019725_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019725_17
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019725_17 facial motor nucleus
Specimen euxassay_019725_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019725_18
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_019725_18
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019725_18
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019725_18
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019725_18 facial motor nucleus
Specimen euxassay_019725_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_019725_19
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_019725_19
TS23: midbrain mantle layer Weak Regionally restricted euxassay_019725_19
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019725_19
TS23: pons mantle layer Weak Regionally restricted euxassay_019725_19 trigeminal motor nucleus
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_019725_19
Specimen euxassay_019725_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019725_20
TS23: midbrain mantle layer Weak Regionally restricted euxassay_019725_20
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_019725_20
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019725_20
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_019725_20
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_019725_20
TS23: lower lip Weak Regionally restricted euxassay_019725_20
Specimen euxassay_019725_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019725_21
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019725_21
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019725_21
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_019725_21
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_019725_21
TS23: upper lip Weak Regionally restricted euxassay_019725_21
TS23: lower lip Weak Regionally restricted euxassay_019725_21
Specimen euxassay_019725_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Regionally restricted euxassay_019725_22
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019725_22
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019725_22
Specimen euxassay_019725_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Regionally restricted euxassay_019725_23
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019725_23
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019725_23
Specimen euxassay_019725_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex ventricular layer Moderate Regionally restricted euxassay_019725_24
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_019725_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory