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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828228
Gene symbol: Slc40a1
Gene name: solute carrier family 40 (iron-regulated transporter), member 1
Probe: MGC clone 6489
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: blood vessel Strong Regionally restricted Expression is present in the vasculature of the brain.
TS23: choroid plexus Moderate
TS23: brain meninges Strong
Specimen euxassay_003910_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_01
TS23: hand Moderate Regionally restricted euxassay_003910_01
TS23: forearm mesenchyme Moderate Regionally restricted euxassay_003910_01
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_003910_01
TS23: foot Moderate Regionally restricted euxassay_003910_01
TS23: brain Moderate Single cells euxassay_003910_01
Specimen euxassay_003910_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_02
TS23: hand Moderate Regionally restricted euxassay_003910_02
TS23: foot Moderate Regionally restricted euxassay_003910_02
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_003910_02
TS23: brain Moderate Single cells euxassay_003910_02
TS23: rib Weak Regionally restricted euxassay_003910_02
Specimen euxassay_003910_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_03
TS23: hand Moderate Regionally restricted euxassay_003910_03
TS23: foot Moderate Regionally restricted euxassay_003910_03
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_003910_03
TS23: lung Moderate Regionally restricted euxassay_003910_03
TS23: brain Moderate Single cells euxassay_003910_03
TS23: rib Weak Regionally restricted euxassay_003910_03
Specimen euxassay_003910_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_04
TS23: foot Moderate Regionally restricted euxassay_003910_04
TS23: hand Moderate Regionally restricted euxassay_003910_04
TS23: lung Moderate Regionally restricted euxassay_003910_04
TS23: brain Moderate Single cells euxassay_003910_04
TS23: rib Weak Regionally restricted euxassay_003910_04
Specimen euxassay_003910_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_05
TS23: metanephros Moderate Regionally restricted euxassay_003910_05
TS23: lung Moderate Regionally restricted euxassay_003910_05
TS23: brain Moderate Single cells euxassay_003910_05
TS23: rib Weak Regionally restricted euxassay_003910_05
Specimen euxassay_003910_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_06
TS23: metanephros Moderate Regionally restricted euxassay_003910_06
TS23: lung Moderate Regionally restricted euxassay_003910_06
TS23: brain Moderate Single cells euxassay_003910_06
TS23: spinal cord Moderate Single cells euxassay_003910_06
TS23: vibrissa Moderate Single cells euxassay_003910_06
TS23: rib Weak Regionally restricted euxassay_003910_06
TS23: axial skeleton cervical region Weak Regionally restricted euxassay_003910_06
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_003910_06
Specimen euxassay_003910_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_07
TS23: metanephros Moderate Regionally restricted euxassay_003910_07
TS23: lung Moderate Regionally restricted euxassay_003910_07
TS23: brain Moderate Single cells euxassay_003910_07
TS23: spinal cord Moderate Single cells euxassay_003910_07
TS23: vibrissa Moderate Single cells euxassay_003910_07
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_003910_07
TS23: axial skeleton lumbar region Weak Regionally restricted euxassay_003910_07
TS23: axial skeleton sacral region Weak Regionally restricted euxassay_003910_07
Specimen euxassay_003910_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_08
TS23: lung Moderate Regionally restricted euxassay_003910_08
TS23: brain Moderate Single cells euxassay_003910_08
TS23: spinal cord Moderate Single cells euxassay_003910_08
TS23: vibrissa Moderate Single cells euxassay_003910_08
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_003910_08
TS23: axial skeleton sacral region Weak Regionally restricted euxassay_003910_08
Specimen euxassay_003910_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_09
TS23: lung Moderate Regionally restricted euxassay_003910_09
TS23: brain Moderate Single cells euxassay_003910_09
TS23: spinal cord Moderate Single cells euxassay_003910_09
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_003910_09
Specimen euxassay_003910_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_10
TS23: lung Moderate Regionally restricted euxassay_003910_10
TS23: midgut Moderate Regionally restricted euxassay_003910_10
TS23: brain Moderate Single cells euxassay_003910_10
TS23: spinal cord Moderate Single cells euxassay_003910_10
Specimen euxassay_003910_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_11
TS23: bladder Moderate Regionally restricted euxassay_003910_11
TS23: urinary system Moderate Regionally restricted euxassay_003910_11
TS23: lung Moderate Regionally restricted euxassay_003910_11
TS23: midgut Moderate Regionally restricted euxassay_003910_11
TS23: rectum Moderate Regionally restricted euxassay_003910_11
TS23: brain Moderate Single cells euxassay_003910_11
TS23: spinal cord Moderate Single cells euxassay_003910_11
Specimen euxassay_003910_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_12
TS23: bladder Moderate Regionally restricted euxassay_003910_12
TS23: lung Moderate Regionally restricted euxassay_003910_12
TS23: midgut Moderate Regionally restricted euxassay_003910_12
TS23: brain Moderate Single cells euxassay_003910_12
TS23: spinal cord Moderate Single cells euxassay_003910_12
Specimen euxassay_003910_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_13
TS23: lung Moderate Regionally restricted euxassay_003910_13
TS23: midgut Moderate Regionally restricted euxassay_003910_13
TS23: brain Moderate Single cells euxassay_003910_13
TS23: spinal cord Moderate Single cells euxassay_003910_13
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_003910_13
Specimen euxassay_003910_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_14
TS23: metanephros Weak Regionally restricted euxassay_003910_14
TS23: lung Moderate Regionally restricted euxassay_003910_14
TS23: midgut Moderate Regionally restricted euxassay_003910_14
TS23: brain Moderate Single cells euxassay_003910_14
TS23: spinal cord Moderate Single cells euxassay_003910_14
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_003910_14
Specimen euxassay_003910_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_15
TS23: metanephros Moderate Regionally restricted euxassay_003910_15
TS23: lung Moderate Regionally restricted euxassay_003910_15
TS23: midgut Moderate Regionally restricted euxassay_003910_15
TS23: brain Moderate Single cells euxassay_003910_15
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_003910_15
TS23: axial skeleton lumbar region Weak Regionally restricted euxassay_003910_15
TS23: axial skeleton sacral region Weak Regionally restricted euxassay_003910_15
TS23: axial skeleton cervical region Weak Regionally restricted euxassay_003910_15
Specimen euxassay_003910_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_16
TS23: metanephros Weak Regionally restricted euxassay_003910_16
TS23: lung Moderate Regionally restricted euxassay_003910_16
TS23: midgut Moderate Regionally restricted euxassay_003910_16
TS23: brain Moderate Single cells euxassay_003910_16
TS23: rib Weak Regionally restricted euxassay_003910_16
Specimen euxassay_003910_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_17
TS23: lung Moderate Regionally restricted euxassay_003910_17
TS23: midgut Moderate Regionally restricted euxassay_003910_17
TS23: brain Moderate Single cells euxassay_003910_17
TS23: rib Moderate Regionally restricted euxassay_003910_17
Specimen euxassay_003910_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_18
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_003910_18
TS23: foot Moderate Regionally restricted euxassay_003910_18
TS23: lung Moderate Regionally restricted euxassay_003910_18
TS23: brain Moderate Single cells euxassay_003910_18
TS23: rib Weak Regionally restricted euxassay_003910_18
Specimen euxassay_003910_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_19
TS23: foot Moderate Regionally restricted euxassay_003910_19
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_003910_19
TS23: lung Moderate Regionally restricted euxassay_003910_19
TS23: brain Moderate Single cells euxassay_003910_19
TS23: rib Weak Regionally restricted euxassay_003910_19
Specimen euxassay_003910_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_20
TS23: foot Moderate Regionally restricted euxassay_003910_20
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_003910_20
TS23: lung Moderate Regionally restricted euxassay_003910_20
TS23: brain Moderate Single cells euxassay_003910_20
TS23: rib Weak Regionally restricted euxassay_003910_20
Specimen euxassay_003910_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_21
TS23: hand Moderate Regionally restricted euxassay_003910_21
TS23: foot Moderate Regionally restricted euxassay_003910_21
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_003910_21
TS23: lung Moderate Regionally restricted euxassay_003910_21
TS23: brain Moderate Single cells euxassay_003910_21
TS23: vibrissa Moderate Single cells euxassay_003910_21
TS23: rib Moderate Single cells euxassay_003910_21
Specimen euxassay_003910_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_22
TS23: hand Moderate Regionally restricted euxassay_003910_22
TS23: foot Moderate Regionally restricted euxassay_003910_22
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_003910_22
TS23: lung Moderate Regionally restricted euxassay_003910_22
TS23: brain Moderate Single cells euxassay_003910_22
TS23: vibrissa Moderate Single cells euxassay_003910_22
TS23: rib Moderate Single cells euxassay_003910_22
Specimen euxassay_003910_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Moderate Regionally restricted euxassay_003910_23
TS23: hand Moderate Regionally restricted euxassay_003910_23
TS23: foot Moderate Regionally restricted euxassay_003910_23
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_003910_23
TS23: lung Moderate Regionally restricted euxassay_003910_23
TS23: brain Moderate Single cells euxassay_003910_23
TS23: rib Moderate Single cells euxassay_003910_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory