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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828128
Gene symbol: Slc1a5
Gene name: solute carrier family 1 (neutral amino acid transporter), member 5
Probe: MGC clone 46952
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: cerebral cortex Strong
TS23: midbrain Strong
TS23: choroid plexus Weak
TS23: brain meninges Strong
Specimen euxassay_006886_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_006886_01
TS23: stomach Moderate Regionally restricted euxassay_006886_01
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_01
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006886_01
TS23: telencephalon meninges Moderate Uniform euxassay_006886_01
Specimen euxassay_006886_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_006886_02
TS23: mandible Weak Regionally restricted euxassay_006886_02
TS23: stomach Moderate Regionally restricted euxassay_006886_02
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_02
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006886_02
TS23: hindbrain meninges Moderate Uniform euxassay_006886_02
TS23: telencephalon meninges Moderate Uniform euxassay_006886_02
Specimen euxassay_006886_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_006886_03
TS23: mandible Weak Regionally restricted euxassay_006886_03
TS23: maxilla Weak Regionally restricted euxassay_006886_03
TS23: stomach Moderate Regionally restricted euxassay_006886_03
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_03
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006886_03
TS23: telencephalon meninges Moderate Uniform euxassay_006886_03
TS23: hindbrain meninges Moderate Uniform euxassay_006886_03
Specimen euxassay_006886_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_006886_04
TS23: mandible Weak Regionally restricted euxassay_006886_04
TS23: maxilla Weak Regionally restricted euxassay_006886_04
TS23: stomach Moderate Regionally restricted euxassay_006886_04
TS23: midgut loop Moderate Regionally restricted euxassay_006886_04
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_04
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006886_04
TS23: hindbrain meninges Moderate Uniform euxassay_006886_04
TS23: telencephalon meninges Moderate Uniform euxassay_006886_04
Specimen euxassay_006886_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_006886_05
TS23: maxilla Moderate Regionally restricted euxassay_006886_05
TS23: mandible Moderate Regionally restricted euxassay_006886_05
TS23: lower jaw molar Moderate Regionally restricted euxassay_006886_05
TS23: upper jaw molar Moderate Regionally restricted euxassay_006886_05
TS23: midgut loop Moderate Regionally restricted euxassay_006886_05
TS23: stomach Moderate Regionally restricted euxassay_006886_05
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_05
TS23: heart left ventricle Weak Regionally restricted euxassay_006886_05
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006886_05
TS23: telencephalon meninges Moderate Uniform euxassay_006886_05
TS23: hindbrain meninges Moderate Uniform euxassay_006886_05
TS23: midbrain meninges Moderate Uniform euxassay_006886_05
Specimen euxassay_006886_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_006886_06
TS23: mandible Weak Regionally restricted euxassay_006886_06
TS23: maxilla Weak Regionally restricted euxassay_006886_06
TS23: stomach Moderate Regionally restricted euxassay_006886_06
TS23: midgut loop Moderate Regionally restricted euxassay_006886_06
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_06
TS23: heart left ventricle Weak Regionally restricted euxassay_006886_06
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006886_06
TS23: diencephalon meninges Moderate Uniform euxassay_006886_06
TS23: telencephalon meninges Moderate Uniform euxassay_006886_06
TS23: hindbrain meninges Moderate Uniform euxassay_006886_06
TS23: midbrain meninges Moderate Uniform euxassay_006886_06
Specimen euxassay_006886_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_006886_07
TS23: maxilla Moderate Regionally restricted euxassay_006886_07
TS23: mandible Moderate Regionally restricted euxassay_006886_07
TS23: midgut loop Moderate Regionally restricted euxassay_006886_07
TS23: stomach Moderate Regionally restricted euxassay_006886_07
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_07
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_006886_07
TS23: olfactory epithelium Strong Regionally restricted euxassay_006886_07
TS23: heart left ventricle Weak Regionally restricted euxassay_006886_07
TS23: midbrain meninges Moderate Uniform euxassay_006886_07
TS23: hindbrain meninges Moderate Uniform euxassay_006886_07
TS23: telencephalon meninges Moderate Uniform euxassay_006886_07
TS23: diencephalon meninges Moderate Uniform euxassay_006886_07
Specimen euxassay_006886_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_006886_08
TS23: mandible Moderate Regionally restricted euxassay_006886_08
TS23: maxilla Moderate Regionally restricted euxassay_006886_08
TS23: midgut loop Moderate Regionally restricted euxassay_006886_08
TS23: stomach Moderate Regionally restricted euxassay_006886_08
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_08
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_006886_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006886_08
TS23: heart left ventricle Weak Regionally restricted euxassay_006886_08
TS23: diencephalon meninges Weak Uniform euxassay_006886_08
TS23: telencephalon meninges Weak Uniform euxassay_006886_08
TS23: midbrain meninges Weak Uniform euxassay_006886_08
TS23: hindbrain meninges Weak Uniform euxassay_006886_08
TS23: spinal cord meninges Weak Uniform euxassay_006886_08
TS23: clavicle Moderate Regionally restricted euxassay_006886_08
TS23: pancreas Weak Regionally restricted euxassay_006886_08
Specimen euxassay_006886_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_006886_09
TS23: mandible Moderate Regionally restricted euxassay_006886_09
TS23: upper jaw incisor Moderate Regionally restricted euxassay_006886_09
TS23: midgut loop Moderate Regionally restricted euxassay_006886_09
TS23: stomach Moderate Regionally restricted euxassay_006886_09
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_09
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_006886_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006886_09
TS23: heart left ventricle Weak Regionally restricted euxassay_006886_09
TS23: diencephalon meninges Weak Uniform euxassay_006886_09
TS23: telencephalon meninges Weak Uniform euxassay_006886_09
TS23: hindbrain meninges Weak Uniform euxassay_006886_09
TS23: midbrain meninges Weak Uniform euxassay_006886_09
TS23: spinal cord meninges Weak Uniform euxassay_006886_09
TS23: clavicle Moderate Regionally restricted euxassay_006886_09
TS23: pancreas Weak Regionally restricted euxassay_006886_09
Specimen euxassay_006886_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_006886_10
TS23: upper jaw incisor Moderate Regionally restricted euxassay_006886_10
TS23: lower jaw incisor Moderate Regionally restricted euxassay_006886_10
TS23: mandible Moderate Regionally restricted euxassay_006886_10
TS23: midgut loop Moderate Regionally restricted euxassay_006886_10
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_10
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_006886_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006886_10
TS23: thymus primordium Moderate Regionally restricted euxassay_006886_10
TS23: heart left ventricle Weak Regionally restricted euxassay_006886_10
TS23: diencephalon meninges Weak Uniform euxassay_006886_10
TS23: telencephalon meninges Weak Uniform euxassay_006886_10
TS23: hindbrain meninges Weak Uniform euxassay_006886_10
TS23: midbrain meninges Weak Uniform euxassay_006886_10
TS23: spinal cord meninges Weak Uniform euxassay_006886_10
TS23: pancreas Weak Regionally restricted euxassay_006886_10
TS23: thyroid gland Moderate Regionally restricted euxassay_006886_10
Specimen euxassay_006886_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver left lobe Strong Regionally restricted euxassay_006886_11
TS23: upper jaw incisor Moderate Regionally restricted euxassay_006886_11
TS23: lower jaw incisor Moderate Regionally restricted euxassay_006886_11
TS23: midgut loop Moderate Regionally restricted euxassay_006886_11
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_006886_11
TS23: thymus primordium Moderate Regionally restricted euxassay_006886_11
TS23: heart left ventricle Weak Regionally restricted euxassay_006886_11
TS23: esophagus Strong Regionally restricted euxassay_006886_11
TS23: bladder fundus Strong Regionally restricted euxassay_006886_11
TS23: urethra Strong Regionally restricted euxassay_006886_11 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: diencephalon meninges Weak Uniform euxassay_006886_11
TS23: telencephalon meninges Weak Uniform euxassay_006886_11
TS23: midbrain meninges Weak Uniform euxassay_006886_11
TS23: hindbrain meninges Weak Uniform euxassay_006886_11
TS23: spinal cord meninges Weak Uniform euxassay_006886_11
TS23: thyroid gland Weak Regionally restricted euxassay_006886_11
Specimen euxassay_006886_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_006886_12
TS23: rectum Moderate Regionally restricted euxassay_006886_12
TS23: hindgut Moderate Regionally restricted euxassay_006886_12
TS23: midgut loop Moderate Regionally restricted euxassay_006886_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_006886_12
TS23: heart left ventricle Weak Regionally restricted euxassay_006886_12
TS23: esophagus Moderate Regionally restricted euxassay_006886_12
TS23: bladder fundus Strong Regionally restricted euxassay_006886_12
TS23: urethra Strong Regionally restricted euxassay_006886_12 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: spinal cord meninges Weak Uniform euxassay_006886_12
TS23: midbrain meninges Weak Uniform euxassay_006886_12
TS23: hindbrain meninges Weak Uniform euxassay_006886_12
TS23: telencephalon meninges Weak Uniform euxassay_006886_12
TS23: diencephalon meninges Weak Uniform euxassay_006886_12
TS23: trachea Moderate Regionally restricted euxassay_006886_12
Specimen euxassay_006886_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_006886_13
TS23: lower jaw incisor Moderate Regionally restricted euxassay_006886_13
TS23: mandible Moderate Regionally restricted euxassay_006886_13
TS23: maxilla Moderate Regionally restricted euxassay_006886_13
TS23: hindgut Moderate Regionally restricted euxassay_006886_13
TS23: midgut loop Moderate Regionally restricted euxassay_006886_13
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_006886_13
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006886_13
TS23: thymus primordium Moderate Regionally restricted euxassay_006886_13
TS23: heart right ventricle Weak Regionally restricted euxassay_006886_13
TS23: esophagus Strong Regionally restricted euxassay_006886_13
TS23: bladder fundus Strong Regionally restricted euxassay_006886_13
TS23: urethra Strong Regionally restricted euxassay_006886_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: diencephalon meninges Weak Uniform euxassay_006886_13
TS23: telencephalon meninges Weak Uniform euxassay_006886_13
TS23: hindbrain meninges Weak Uniform euxassay_006886_13
TS23: midbrain meninges Weak Uniform euxassay_006886_13
TS23: spinal cord meninges Weak Uniform euxassay_006886_13
Specimen euxassay_006886_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_006886_14
TS23: upper jaw incisor Moderate Regionally restricted euxassay_006886_14
TS23: lower jaw incisor Moderate Regionally restricted euxassay_006886_14
TS23: mandible Moderate Regionally restricted euxassay_006886_14
TS23: midgut Moderate Regionally restricted euxassay_006886_14
TS23: hindgut Moderate Regionally restricted euxassay_006886_14
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_14
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_006886_14
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006886_14
TS23: thymus primordium Moderate Regionally restricted euxassay_006886_14
TS23: heart right ventricle Weak Regionally restricted euxassay_006886_14
TS23: diencephalon meninges Moderate Uniform euxassay_006886_14
TS23: telencephalon meninges Moderate Uniform euxassay_006886_14
TS23: hindbrain meninges Moderate Uniform euxassay_006886_14
TS23: midbrain meninges Moderate Uniform euxassay_006886_14
TS23: spinal cord meninges Moderate Uniform euxassay_006886_14
TS23: thyroid gland Moderate Regionally restricted euxassay_006886_14
Specimen euxassay_006886_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_006886_15
TS23: mandible Moderate Regionally restricted euxassay_006886_15
TS23: upper jaw incisor Moderate Regionally restricted euxassay_006886_15
TS23: midgut Moderate Regionally restricted euxassay_006886_15
TS23: hindgut Moderate Regionally restricted euxassay_006886_15
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_15
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_006886_15
TS23: olfactory epithelium Moderate Regionally restricted euxassay_006886_15
TS23: heart right ventricle Weak Regionally restricted euxassay_006886_15
TS23: telencephalon meninges Moderate Uniform euxassay_006886_15
TS23: diencephalon meninges Moderate Uniform euxassay_006886_15
TS23: hindbrain meninges Moderate Uniform euxassay_006886_15
TS23: midbrain meninges Moderate Uniform euxassay_006886_15
TS23: spinal cord meninges Moderate Uniform euxassay_006886_15
TS23: clavicle Moderate Regionally restricted euxassay_006886_15
Specimen euxassay_006886_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_006886_16
TS23: mandible Moderate Regionally restricted euxassay_006886_16
TS23: midgut loop Moderate Regionally restricted euxassay_006886_16
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_16
TS23: olfactory epithelium Strong Regionally restricted euxassay_006886_16
TS23: heart right ventricle Weak Regionally restricted euxassay_006886_16
TS23: diencephalon meninges Moderate Uniform euxassay_006886_16
TS23: telencephalon meninges Moderate Uniform euxassay_006886_16
TS23: hindbrain meninges Moderate Uniform euxassay_006886_16
TS23: midbrain meninges Moderate Uniform euxassay_006886_16
TS23: clavicle Moderate Regionally restricted euxassay_006886_16
Specimen euxassay_006886_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_006886_17
TS23: maxilla Moderate Regionally restricted euxassay_006886_17
TS23: mandible Moderate Regionally restricted euxassay_006886_17
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_17
TS23: olfactory epithelium Strong Regionally restricted euxassay_006886_17
TS23: heart right ventricle Weak Regionally restricted euxassay_006886_17
TS23: diencephalon meninges Moderate Uniform euxassay_006886_17
TS23: telencephalon meninges Moderate Uniform euxassay_006886_17
TS23: hindbrain meninges Moderate Uniform euxassay_006886_17
TS23: midbrain meninges Moderate Uniform euxassay_006886_17
Specimen euxassay_006886_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_006886_18
TS23: mandible Weak Regionally restricted euxassay_006886_18
TS23: maxilla Weak Regionally restricted euxassay_006886_18
TS23: upper jaw molar Moderate Regionally restricted euxassay_006886_18
TS23: lower jaw molar Moderate Regionally restricted euxassay_006886_18
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_18
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006886_18
TS23: telencephalon meninges Moderate Uniform euxassay_006886_18
TS23: hindbrain meninges Moderate Uniform euxassay_006886_18
TS23: midbrain meninges Moderate Uniform euxassay_006886_18
Specimen euxassay_006886_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_006886_19
TS23: maxilla Weak Regionally restricted euxassay_006886_19
TS23: mandible Weak Regionally restricted euxassay_006886_19
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_19
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006886_19
TS23: telencephalon meninges Moderate Uniform euxassay_006886_19
TS23: hindbrain meninges Moderate Uniform euxassay_006886_19
Specimen euxassay_006886_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_006886_20
TS23: mandible Weak Regionally restricted euxassay_006886_20
TS23: maxilla Weak Regionally restricted euxassay_006886_20
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_20
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006886_20
TS23: telencephalon meninges Weak Uniform euxassay_006886_20
TS23: hindbrain meninges Weak Uniform euxassay_006886_20
Specimen euxassay_006886_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_006886_21
TS23: mandible Moderate Regionally restricted euxassay_006886_21
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_21
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006886_21
TS23: telencephalon meninges Weak Uniform euxassay_006886_21
Specimen euxassay_006886_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_006886_22
TS23: telencephalon ventricular layer Moderate Uniform euxassay_006886_22
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006886_22
TS23: telencephalon meninges Weak Uniform euxassay_006886_22
Specimen euxassay_006886_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Strong Regionally restricted euxassay_006886_23
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_006886_23
TS23: telencephalon meninges Weak Uniform euxassay_006886_23
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory