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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828092
Gene symbol: Slc10a4
Gene name: solute carrier family 10 (sodium/bile acid cotransporter family), member 4
Probe: T38333
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: corpus striatum Moderate
TS23: medulla oblongata Moderate
TS23: midbrain Moderate
TS23: pons Moderate
Specimen euxassay_010865_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_010865_05
TS23: pons mantle layer Moderate Single cells euxassay_010865_05
TS23: cervical ganglion Weak Single cells euxassay_010865_05
Specimen euxassay_010865_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Strong Regionally restricted euxassay_010865_06
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010865_06
TS23: pons mantle layer Strong Single cells euxassay_010865_06
TS23: telencephalon mantle layer Strong Single cells euxassay_010865_06
TS23: cervico-thoracic ganglion Weak Single cells euxassay_010865_06
TS23: cervical ganglion Weak Single cells euxassay_010865_06
Specimen euxassay_010865_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Strong Regionally restricted euxassay_010865_07
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010865_07
TS23: pons mantle layer Strong Single cells euxassay_010865_07
TS23: telencephalon mantle layer Strong Single cells euxassay_010865_07
Specimen euxassay_010865_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: ventral grey horn Strong Regionally restricted euxassay_010865_08
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010865_08
TS23: telencephalon mantle layer Strong Single cells euxassay_010865_08
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010865_08 basal plate
Specimen euxassay_010865_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: ventral grey horn Strong Regionally restricted euxassay_010865_09
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010865_09
TS23: telencephalon mantle layer Strong Single cells euxassay_010865_09
TS23: midbrain mantle layer Strong Single cells euxassay_010865_09 basal plate
TS23: trigeminal nerve Moderate Regionally restricted euxassay_010865_09
Specimen euxassay_010865_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: ventral grey horn Strong Regionally restricted euxassay_010865_10
TS23: pons mantle layer Strong Single cells euxassay_010865_10
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010865_10
TS23: telencephalon mantle layer Strong Single cells euxassay_010865_10
TS23: midbrain mantle layer Strong Single cells euxassay_010865_10 basal plate
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010865_10 basal plate
TS23: trigeminal nerve Moderate Regionally restricted euxassay_010865_10
TS23: thoracic ganglion Weak Single cells euxassay_010865_10
Specimen euxassay_010865_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: ventral grey horn Strong Regionally restricted euxassay_010865_11
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010865_11
TS23: pons mantle layer Strong Single cells euxassay_010865_11
TS23: telencephalon mantle layer Strong Single cells euxassay_010865_11
TS23: midbrain mantle layer Strong Single cells euxassay_010865_11 basal plate
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010865_11 basal plate
TS23: thoracic ganglion Weak Single cells euxassay_010865_11
Specimen euxassay_010865_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: ventral grey horn Strong Regionally restricted euxassay_010865_12
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010865_12
TS23: telencephalon mantle layer Strong Single cells euxassay_010865_12
TS23: midbrain mantle layer Strong Single cells euxassay_010865_12 basal plate
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010865_12 basal plate
TS23: cervico-thoracic ganglion Moderate Single cells euxassay_010865_12
Specimen euxassay_010865_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: ventral grey horn Strong Regionally restricted euxassay_010865_13
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010865_13
TS23: telencephalon mantle layer Strong Single cells euxassay_010865_13
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010865_13 basal plate
TS23: midbrain mantle layer Strong Single cells euxassay_010865_13 basal plate
Specimen euxassay_010865_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010865_14
TS23: telencephalon mantle layer Moderate Single cells euxassay_010865_14
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010865_14 basal plate
TS23: midbrain mantle layer Strong Single cells euxassay_010865_14 basal plate
TS23: cervical ganglion Weak Single cells euxassay_010865_14
Specimen euxassay_010865_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Single cells euxassay_010865_15
TS23: medulla oblongata basal plate mantle layer Strong Single cells euxassay_010865_15
TS23: telencephalon mantle layer Moderate Single cells euxassay_010865_15
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010865_15 basal plate
TS23: cervical ganglion Weak Single cells euxassay_010865_15
Specimen euxassay_010865_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Single cells euxassay_010865_16
TS23: telencephalon mantle layer Moderate Single cells euxassay_010865_16
TS23: diencephalon lateral wall mantle layer Strong Single cells euxassay_010865_16 basal plate
TS23: trigeminal nerve Moderate Regionally restricted euxassay_010865_16
Specimen euxassay_010865_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Single cells euxassay_010865_17
TS23: telencephalon mantle layer Moderate Single cells euxassay_010865_17
Specimen euxassay_010865_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Single cells euxassay_010865_18
Specimen euxassay_010865_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Single cells euxassay_010865_19
Specimen euxassay_010865_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Single cells euxassay_010865_20
Specimen euxassay_010865_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Single cells euxassay_010865_21
Specimen euxassay_010865_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Single cells euxassay_010865_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
MGI 6.23 		The Jackson Laboratory