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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828061
Gene symbol: Shmt1
Gene name: serine hydroxymethyltransferase 1 (soluble)
Probe: T31152
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_010621_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_02
Specimen euxassay_010621_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_03
Specimen euxassay_010621_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_04
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_010621_04
TS23: renal cortex Weak Regionally restricted euxassay_010621_04
Specimen euxassay_010621_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_010621_05
TS23: upper jaw molar Weak Regionally restricted euxassay_010621_05
TS23: lower jaw molar Weak Regionally restricted euxassay_010621_05
TS23: pancreas Weak Regionally restricted euxassay_010621_05
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_05
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_010621_05
TS23: vibrissa Weak Regionally restricted euxassay_010621_05
TS23: renal cortex Weak Regionally restricted euxassay_010621_05
Specimen euxassay_010621_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_010621_06
TS23: upper jaw molar Weak Regionally restricted euxassay_010621_06
TS23: lower jaw molar Weak Regionally restricted euxassay_010621_06
TS23: pancreas Weak Regionally restricted euxassay_010621_06
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_06
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_010621_06
TS23: vibrissa Weak Regionally restricted euxassay_010621_06
TS23: renal cortex Weak Regionally restricted euxassay_010621_06
Specimen euxassay_010621_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010621_07
TS23: pancreas Weak Regionally restricted euxassay_010621_07
TS23: thymus primordium Weak Regionally restricted euxassay_010621_07
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_07
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_010621_07
TS23: vibrissa Weak Regionally restricted euxassay_010621_07
Specimen euxassay_010621_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pancreas Weak Regionally restricted euxassay_010621_08
TS23: thymus primordium Weak Regionally restricted euxassay_010621_08
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_08
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_010621_08
TS23: vibrissa Weak Regionally restricted euxassay_010621_08
Specimen euxassay_010621_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_09
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_010621_09
TS23: midgut Weak Regionally restricted euxassay_010621_09
Specimen euxassay_010621_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lower jaw incisor Weak Regionally restricted euxassay_010621_10
TS23: thymus primordium Weak Regionally restricted euxassay_010621_10
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_10
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_010621_10
TS23: midgut Weak Regionally restricted euxassay_010621_10
TS23: rectum Weak Regionally restricted euxassay_010621_10
TS23: hindgut Weak Regionally restricted euxassay_010621_10
Specimen euxassay_010621_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Weak Regionally restricted euxassay_010621_11
TS23: lower jaw incisor Weak Regionally restricted euxassay_010621_11
TS23: thymus primordium Weak Regionally restricted euxassay_010621_11
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_11
TS23: midgut Weak Regionally restricted euxassay_010621_11
TS23: hindgut Weak Regionally restricted euxassay_010621_11
Specimen euxassay_010621_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Weak Regionally restricted euxassay_010621_12
TS23: midgut Weak Regionally restricted euxassay_010621_12
TS23: renal cortex Weak Regionally restricted euxassay_010621_12
Specimen euxassay_010621_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010621_13
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_13
TS23: midgut Weak Regionally restricted euxassay_010621_13
TS23: renal cortex Weak Regionally restricted euxassay_010621_13
Specimen euxassay_010621_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: submandibular gland primordium Weak Regionally restricted euxassay_010621_14
TS23: lower jaw incisor Weak Regionally restricted euxassay_010621_14
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_14
TS23: midgut Weak Regionally restricted euxassay_010621_14
TS23: renal cortex Weak Regionally restricted euxassay_010621_14
Specimen euxassay_010621_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_010621_15
TS23: upper jaw incisor Weak Regionally restricted euxassay_010621_15
TS23: lower jaw incisor Weak Regionally restricted euxassay_010621_15
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_15
TS23: midgut Weak Regionally restricted euxassay_010621_15
TS23: renal cortex Weak Regionally restricted euxassay_010621_15
Specimen euxassay_010621_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw molar Moderate Regionally restricted euxassay_010621_16
TS23: lower jaw molar Moderate Regionally restricted euxassay_010621_16
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_16
TS23: midgut Weak Regionally restricted euxassay_010621_16
Specimen euxassay_010621_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw molar Moderate Regionally restricted euxassay_010621_17
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_17
Specimen euxassay_010621_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Uniform euxassay_010621_18
TS23: vibrissa Weak Regionally restricted euxassay_010621_18
Specimen euxassay_010621_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Weak Regionally restricted euxassay_010621_20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory