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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827970
Gene symbol: Serinc5
Gene name: serine incorporator 5
Probe: T30375
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_011506_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_01
Specimen euxassay_011506_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_02
Specimen euxassay_011506_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_03
Specimen euxassay_011506_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_04
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_04
Specimen euxassay_011506_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_05
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_05
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_011506_05
Specimen euxassay_011506_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_06
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_06
TS23: vibrissa Strong Regionally restricted euxassay_011506_06
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_011506_06
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_011506_06
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_011506_06
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_011506_06
Specimen euxassay_011506_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_07
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_07
TS23: lower jaw molar Strong Regionally restricted euxassay_011506_07
TS23: upper jaw molar Strong Regionally restricted euxassay_011506_07
TS23: vibrissa Strong Regionally restricted euxassay_011506_07
TS23: forelimb digit 4 phalanx Strong Regionally restricted euxassay_011506_07
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_011506_07
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_011506_07
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_011506_07
Specimen euxassay_011506_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_08
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_08
TS23: upper jaw molar Strong Regionally restricted euxassay_011506_08
TS23: lower jaw molar Strong Regionally restricted euxassay_011506_08
TS23: vibrissa Strong Regionally restricted euxassay_011506_08
TS23: forelimb digit 4 phalanx Strong Regionally restricted euxassay_011506_08
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_011506_08
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_011506_08
Specimen euxassay_011506_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_09
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_011506_09
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_09
TS23: clavicle Strong Regionally restricted euxassay_011506_09
Specimen euxassay_011506_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_10
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_011506_10
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_10
TS23: clavicle Strong Regionally restricted euxassay_011506_10
TS23: thyroid gland Strong Regionally restricted euxassay_011506_10
Specimen euxassay_011506_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_11
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_011506_11
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_11
TS23: midbrain floor plate Strong Regionally restricted euxassay_011506_11
TS23: clavicle Strong Regionally restricted euxassay_011506_11
TS23: thyroid gland Strong Regionally restricted euxassay_011506_11
Specimen euxassay_011506_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_12
TS23: metencephalon floor plate Strong Regionally restricted euxassay_011506_12
TS23: medulla oblongata floor plate Strong Regionally restricted euxassay_011506_12
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_12
TS23: midbrain floor plate Strong Regionally restricted euxassay_011506_12
TS23: diencephalon floor plate Strong Regionally restricted euxassay_011506_12
TS23: thyroid gland Strong Regionally restricted euxassay_011506_12
Specimen euxassay_011506_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_13
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_13
TS23: metencephalon floor plate Strong Regionally restricted euxassay_011506_13
TS23: spinal cord floor plate Strong Regionally restricted euxassay_011506_13
TS23: anterior naris Strong Spotted euxassay_011506_13
TS23: lower jaw incisor Strong Regionally restricted euxassay_011506_13
TS23: upper jaw incisor Strong Regionally restricted euxassay_011506_13
TS23: thyroid gland Strong Regionally restricted euxassay_011506_13
Specimen euxassay_011506_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_14
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_14
TS23: spinal cord floor plate Strong Regionally restricted euxassay_011506_14
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_011506_14
TS23: anterior naris Strong Spotted euxassay_011506_14
TS23: thyroid gland Strong Regionally restricted euxassay_011506_14
Specimen euxassay_011506_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_15
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_15
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_011506_15
TS23: thyroid gland Strong Regionally restricted euxassay_011506_15
Specimen euxassay_011506_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_16
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_011506_16
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_16
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_011506_16
TS23: anterior naris Strong Spotted euxassay_011506_16
TS23: lower jaw incisor Strong Regionally restricted euxassay_011506_16
TS23: upper jaw incisor Strong Regionally restricted euxassay_011506_16
TS23: thyroid gland Strong Regionally restricted euxassay_011506_16
Specimen euxassay_011506_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_17
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_011506_17
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_17
TS23: anterior naris Strong Spotted euxassay_011506_17
TS23: lower jaw incisor Strong Regionally restricted euxassay_011506_17
TS23: upper jaw incisor Strong Regionally restricted euxassay_011506_17
TS23: clavicle Strong Regionally restricted euxassay_011506_17
TS23: thyroid gland Strong Regionally restricted euxassay_011506_17
Specimen euxassay_011506_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_18
TS23: medulla oblongata alar plate ventricular layer Strong Regionally restricted euxassay_011506_18
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_18
TS23: clavicle Strong Regionally restricted euxassay_011506_18
Specimen euxassay_011506_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_19
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_19
TS23: lower jaw molar Strong Regionally restricted euxassay_011506_19
TS23: upper jaw molar Strong Regionally restricted euxassay_011506_19
Specimen euxassay_011506_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_20
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_011506_20
TS23: upper jaw molar Strong Regionally restricted euxassay_011506_20
TS23: lower jaw molar Strong Regionally restricted euxassay_011506_20
TS23: vibrissa Strong Regionally restricted euxassay_011506_20
Specimen euxassay_011506_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_21
TS23: vibrissa Strong Regionally restricted euxassay_011506_21
Specimen euxassay_011506_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_22
TS23: vibrissa Strong Regionally restricted euxassay_011506_22
Specimen euxassay_011506_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_011506_23
TS23: vibrissa Strong Regionally restricted euxassay_011506_23
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_011506_23
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_011506_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory