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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827945
Gene symbol: Sema3d
Gene name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
Probe: T39063
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_013219_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cornea Weak Regionally restricted euxassay_013219_01
TS23: hand mesenchyme Weak Regionally restricted euxassay_013219_01
TS23: ear Weak Regionally restricted euxassay_013219_01
Specimen euxassay_013219_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_013219_02
TS23: cornea Weak Regionally restricted euxassay_013219_02
TS23: pericardial component Weak Regionally restricted euxassay_013219_02
TS23: pleural component Weak Regionally restricted euxassay_013219_02
TS23: hand mesenchyme Weak Regionally restricted euxassay_013219_02
TS23: ear Weak Regionally restricted euxassay_013219_02
Specimen euxassay_013219_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_013219_03
TS23: maxilla Moderate Regionally restricted euxassay_013219_03
TS23: cornea Weak Regionally restricted euxassay_013219_03
TS23: pleural component Weak Regionally restricted euxassay_013219_03
TS23: pericardial component Weak Regionally restricted euxassay_013219_03
TS23: hand mesenchyme Weak Regionally restricted euxassay_013219_03
TS23: ear Weak Regionally restricted euxassay_013219_03
Specimen euxassay_013219_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: maxilla Weak Regionally restricted euxassay_013219_04
TS23: mandible Weak Regionally restricted euxassay_013219_04
TS23: cornea Weak Regionally restricted euxassay_013219_04
TS23: pleural component Weak Regionally restricted euxassay_013219_04
TS23: pericardial component Weak Regionally restricted euxassay_013219_04
TS23: hand mesenchyme Weak Regionally restricted euxassay_013219_04
TS23: foot mesenchyme Weak Regionally restricted euxassay_013219_04
TS23: ear Weak Regionally restricted euxassay_013219_04
Specimen euxassay_013219_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_013219_05
TS23: pericardial component Weak Regionally restricted euxassay_013219_05
TS23: pleural component Weak Regionally restricted euxassay_013219_05
TS23: hindlimb digit 1 mesenchyme Weak Regionally restricted euxassay_013219_05
TS23: hindlimb digit 2 mesenchyme Weak Regionally restricted euxassay_013219_05
TS23: hindlimb digit 3 mesenchyme Weak Regionally restricted euxassay_013219_05
TS23: ear Weak Regionally restricted euxassay_013219_05
Specimen euxassay_013219_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_013219_06
TS23: peritoneum Weak Regionally restricted euxassay_013219_06
TS23: pericardial component Weak Regionally restricted euxassay_013219_06
TS23: pleural component Weak Regionally restricted euxassay_013219_06
TS23: clavicle Weak Regionally restricted euxassay_013219_06
TS23: hindlimb digit 3 mesenchyme Weak Regionally restricted euxassay_013219_06
TS23: hindlimb digit 4 mesenchyme Weak Regionally restricted euxassay_013219_06
Specimen euxassay_013219_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_013219_07
TS23: pleural component Weak Regionally restricted euxassay_013219_07
TS23: peritoneum Weak Regionally restricted euxassay_013219_07
TS23: pericardial component Weak Regionally restricted euxassay_013219_07
TS23: diaphragm Weak Regionally restricted euxassay_013219_07
TS23: clavicle Moderate Regionally restricted euxassay_013219_07
TS23: foot mesenchyme Weak Regionally restricted euxassay_013219_07
TS23: submandibular gland primordium Weak Regionally restricted euxassay_013219_07
Specimen euxassay_013219_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_013219_08
TS23: pericardial component Weak Regionally restricted euxassay_013219_08
TS23: peritoneum Weak Regionally restricted euxassay_013219_08
TS23: pleural component Weak Regionally restricted euxassay_013219_08
TS23: diaphragm Weak Regionally restricted euxassay_013219_08
TS23: clavicle Moderate Regionally restricted euxassay_013219_08
TS23: submandibular gland primordium Weak Regionally restricted euxassay_013219_08
Specimen euxassay_013219_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: peritoneum Weak Regionally restricted euxassay_013219_09
TS23: pericardial component Weak Regionally restricted euxassay_013219_09
TS23: pleural component Weak Regionally restricted euxassay_013219_09
TS23: diaphragm Weak Regionally restricted euxassay_013219_09
Specimen euxassay_013219_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Moderate Regionally restricted euxassay_013219_10
TS23: lower jaw incisor Moderate Regionally restricted euxassay_013219_10
TS23: pleural component Weak Regionally restricted euxassay_013219_10
TS23: peritoneum Weak Regionally restricted euxassay_013219_10
TS23: pericardial component Weak Regionally restricted euxassay_013219_10
TS23: diaphragm Weak Regionally restricted euxassay_013219_10
TS23: nasal septum Weak Regionally restricted euxassay_013219_10
Specimen euxassay_013219_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Moderate Regionally restricted euxassay_013219_11
TS23: lower jaw incisor Moderate Regionally restricted euxassay_013219_11
TS23: peritoneum Weak Regionally restricted euxassay_013219_11
TS23: pericardial component Weak Regionally restricted euxassay_013219_11
TS23: pleural component Weak Regionally restricted euxassay_013219_11
TS23: diaphragm Weak Regionally restricted euxassay_013219_11
TS23: thyroid cartilage Weak Regionally restricted euxassay_013219_11
TS23: esophagus Moderate Regionally restricted euxassay_013219_11
TS23: naris Weak Regionally restricted euxassay_013219_11
Specimen euxassay_013219_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Weak Regionally restricted euxassay_013219_12
TS23: lower jaw incisor Weak Regionally restricted euxassay_013219_12
TS23: diaphragm Weak Regionally restricted euxassay_013219_12
TS23: pericardial component Weak Regionally restricted euxassay_013219_12
TS23: peritoneum Weak Regionally restricted euxassay_013219_12
TS23: pleural component Weak Regionally restricted euxassay_013219_12
TS23: trachea Weak Regionally restricted euxassay_013219_12
TS23: thyroid cartilage Weak Regionally restricted euxassay_013219_12
TS23: nephric duct of male Weak Regionally restricted euxassay_013219_12
TS23: naris Weak Regionally restricted euxassay_013219_12
TS23: nasal septum Weak Regionally restricted euxassay_013219_12
Specimen euxassay_013219_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Weak Regionally restricted euxassay_013219_13
TS23: lower jaw incisor Weak Regionally restricted euxassay_013219_13
TS23: pericardial component Weak Regionally restricted euxassay_013219_13
TS23: diaphragm Weak Regionally restricted euxassay_013219_13
TS23: peritoneum Weak Regionally restricted euxassay_013219_13
TS23: pleural component Weak Regionally restricted euxassay_013219_13
TS23: urethra Moderate Regionally restricted euxassay_013219_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: nasal septum Weak Regionally restricted euxassay_013219_13
Specimen euxassay_013219_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diaphragm Weak Regionally restricted euxassay_013219_14
TS23: peritoneum Weak Regionally restricted euxassay_013219_14
TS23: pericardial component Weak Regionally restricted euxassay_013219_14
TS23: pleural component Weak Regionally restricted euxassay_013219_14
TS23: clavicle Weak Regionally restricted euxassay_013219_14
TS23: nephric duct of male Weak Regionally restricted euxassay_013219_14
TS23: nasal septum Weak Regionally restricted euxassay_013219_14
TS23: naris Weak Regionally restricted euxassay_013219_14
Specimen euxassay_013219_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Weak Regionally restricted euxassay_013219_15
TS23: lower jaw incisor Weak Regionally restricted euxassay_013219_15
TS23: diaphragm Weak Regionally restricted euxassay_013219_15
TS23: pericardial component Weak Regionally restricted euxassay_013219_15
TS23: pleural component Weak Regionally restricted euxassay_013219_15
TS23: clavicle Moderate Regionally restricted euxassay_013219_15
TS23: nephric duct of male Weak Regionally restricted euxassay_013219_15
TS23: nasal septum Weak Regionally restricted euxassay_013219_15
TS23: naris Weak Regionally restricted euxassay_013219_15
Specimen euxassay_013219_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Weak Regionally restricted euxassay_013219_16
TS23: lower jaw incisor Weak Regionally restricted euxassay_013219_16
TS23: pleural component Weak Regionally restricted euxassay_013219_16
TS23: pericardial component Weak Regionally restricted euxassay_013219_16
TS23: diaphragm Weak Regionally restricted euxassay_013219_16
TS23: clavicle Weak Regionally restricted euxassay_013219_16
TS23: nasal septum Weak Regionally restricted euxassay_013219_16
TS23: naris Weak Regionally restricted euxassay_013219_16
TS23: submandibular gland primordium Weak Regionally restricted euxassay_013219_16
Specimen euxassay_013219_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_013219_17
TS23: pericardial component Weak Regionally restricted euxassay_013219_17
TS23: pleural component Weak Regionally restricted euxassay_013219_17
TS23: submandibular gland primordium Weak Regionally restricted euxassay_013219_17
Specimen euxassay_013219_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_013219_18
TS23: pleural component Weak Regionally restricted euxassay_013219_18
TS23: pericardial component Weak Regionally restricted euxassay_013219_18
TS23: submandibular gland primordium Weak Regionally restricted euxassay_013219_18
Specimen euxassay_013219_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_013219_19
TS23: peritoneum Weak Regionally restricted euxassay_013219_19
TS23: pericardial component Weak Regionally restricted euxassay_013219_19
TS23: pleural component Weak Regionally restricted euxassay_013219_19
TS23: hindlimb digit 5 mesenchyme Weak Regionally restricted euxassay_013219_19
TS23: hindlimb digit 4 mesenchyme Weak Regionally restricted euxassay_013219_19
TS23: hindlimb digit 3 mesenchyme Weak Regionally restricted euxassay_013219_19
TS23: hindlimb digit 2 mesenchyme Weak Regionally restricted euxassay_013219_19
TS23: ear Weak Regionally restricted euxassay_013219_19
Specimen euxassay_013219_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_013219_20
TS23: peritoneum Weak Regionally restricted euxassay_013219_20
TS23: pericardial component Weak Regionally restricted euxassay_013219_20
TS23: pleural component Weak Regionally restricted euxassay_013219_20
TS23: hindlimb digit 4 mesenchyme Weak Regionally restricted euxassay_013219_20
TS23: hindlimb digit 3 mesenchyme Weak Regionally restricted euxassay_013219_20
TS23: hindlimb digit 2 mesenchyme Weak Regionally restricted euxassay_013219_20
TS23: ear Weak Regionally restricted euxassay_013219_20
Specimen euxassay_013219_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_013219_21
TS23: pericardial component Weak Regionally restricted euxassay_013219_21
TS23: pleural component Weak Regionally restricted euxassay_013219_21
TS23: peritoneum Weak Regionally restricted euxassay_013219_21
TS23: hindlimb digit 1 mesenchyme Weak Regionally restricted euxassay_013219_21
TS23: hindlimb digit 2 mesenchyme Weak Regionally restricted euxassay_013219_21
TS23: hindlimb digit 3 mesenchyme Weak Regionally restricted euxassay_013219_21
TS23: hindlimb digit 4 mesenchyme Weak Regionally restricted euxassay_013219_21
TS23: ear Weak Regionally restricted euxassay_013219_21
Specimen euxassay_013219_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_013219_22
TS23: cornea Weak Regionally restricted euxassay_013219_22
TS23: pericardial component Weak Regionally restricted euxassay_013219_22
TS23: pleural component Weak Regionally restricted euxassay_013219_22
TS23: hand mesenchyme Weak Regionally restricted euxassay_013219_22
TS23: ear Weak Regionally restricted euxassay_013219_22
Specimen euxassay_013219_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cornea Weak Regionally restricted euxassay_013219_23
TS23: pleural component Weak Regionally restricted euxassay_013219_23
TS23: hand mesenchyme Weak Regionally restricted euxassay_013219_23
TS23: ear Weak Regionally restricted euxassay_013219_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory