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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827920
Gene symbol: Sdc4
Gene name: syndecan 4
Probe: IMAGE clone 2317560
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_007889_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_01
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_007889_01
TS23: exoccipital bone Moderate Regionally restricted euxassay_007889_01
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_007889_01
TS23: cornea epithelium Weak Regionally restricted euxassay_007889_01
TS23: femur Moderate Regionally restricted euxassay_007889_01
Specimen euxassay_007889_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_02
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_007889_02
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_007889_02
TS23: exoccipital bone Moderate Regionally restricted euxassay_007889_02
TS23: vibrissa Moderate Regionally restricted euxassay_007889_02
TS23: cornea epithelium Weak Regionally restricted euxassay_007889_02
TS23: stomach Moderate Regionally restricted euxassay_007889_02
TS23: tarsus Weak Regionally restricted euxassay_007889_02
Specimen euxassay_007889_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_03
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_007889_03
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_007889_03
TS23: exoccipital bone Moderate Regionally restricted euxassay_007889_03
TS23: vibrissa Moderate Regionally restricted euxassay_007889_03
TS23: cornea epithelium Weak Regionally restricted euxassay_007889_03
TS23: lung Strong Regionally restricted euxassay_007889_03
TS23: stomach Moderate Regionally restricted euxassay_007889_03
TS23: humerus Strong Regionally restricted euxassay_007889_03
TS23: tarsus Weak Regionally restricted euxassay_007889_03
TS23: hindlimb digit 2 metatarsal Weak Regionally restricted euxassay_007889_03
TS23: hindlimb digit 3 metatarsal Weak Regionally restricted euxassay_007889_03
TS23: hindlimb digit 4 metatarsal Weak Regionally restricted euxassay_007889_03
TS23: hindlimb digit 5 metatarsal Weak Regionally restricted euxassay_007889_03
Specimen euxassay_007889_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_04
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_007889_04
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_007889_04
TS23: exoccipital bone Moderate Regionally restricted euxassay_007889_04
TS23: vibrissa Moderate Regionally restricted euxassay_007889_04
TS23: lung Strong Regionally restricted euxassay_007889_04
TS23: stomach Moderate Regionally restricted euxassay_007889_04
TS23: humerus Strong Regionally restricted euxassay_007889_04
Specimen euxassay_007889_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_05
TS23: temporal bone petrous part Strong Regionally restricted euxassay_007889_05
TS23: exoccipital bone Strong Regionally restricted euxassay_007889_05
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007889_05
TS23: vibrissa Strong Regionally restricted euxassay_007889_05
TS23: lung Strong Regionally restricted euxassay_007889_05
TS23: stomach Moderate Regionally restricted euxassay_007889_05
TS23: humerus Strong Regionally restricted euxassay_007889_05
TS23: otic capsule Moderate Regionally restricted euxassay_007889_05
TS23: femur Moderate Regionally restricted euxassay_007889_05
Specimen euxassay_007889_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_06
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007889_06
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007889_06
TS23: exoccipital bone Strong Regionally restricted euxassay_007889_06
TS23: temporal bone petrous part Strong Regionally restricted euxassay_007889_06
TS23: renal calyx Weak Regionally restricted euxassay_007889_06
TS23: lung Strong Regionally restricted euxassay_007889_06
TS23: stomach Moderate Regionally restricted euxassay_007889_06
TS23: submandibular gland primordium Strong Regionally restricted euxassay_007889_06
TS23: otic capsule Moderate Regionally restricted euxassay_007889_06
TS23: femur Weak Regionally restricted euxassay_007889_06
Specimen euxassay_007889_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_07
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007889_07
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007889_07
TS23: exoccipital bone Strong Regionally restricted euxassay_007889_07
TS23: renal calyx Moderate Regionally restricted euxassay_007889_07
TS23: lung Strong Regionally restricted euxassay_007889_07
TS23: stomach Moderate Regionally restricted euxassay_007889_07
TS23: submandibular gland primordium Strong Regionally restricted euxassay_007889_07
TS23: otic capsule Moderate Regionally restricted euxassay_007889_07
TS23: femur Moderate Regionally restricted euxassay_007889_07
Specimen euxassay_007889_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_08
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007889_08
TS23: renal pelvis Moderate Regionally restricted euxassay_007889_08
TS23: lung Strong Regionally restricted euxassay_007889_08
TS23: stomach Moderate Regionally restricted euxassay_007889_08
TS23: midgut Moderate Regionally restricted euxassay_007889_08
TS23: submandibular gland primordium Strong Regionally restricted euxassay_007889_08
TS23: hip Moderate Regionally restricted euxassay_007889_08
TS23: otic capsule Moderate Regionally restricted euxassay_007889_08
TS23: pancreas Moderate Regionally restricted euxassay_007889_08
Specimen euxassay_007889_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_09
TS23: renal calyx Moderate Regionally restricted euxassay_007889_09
TS23: lung Strong Regionally restricted euxassay_007889_09
TS23: stomach Moderate Regionally restricted euxassay_007889_09
TS23: midgut Moderate Regionally restricted euxassay_007889_09
TS23: submandibular gland primordium Strong Regionally restricted euxassay_007889_09
TS23: otic capsule Moderate Regionally restricted euxassay_007889_09
TS23: clavicle Strong Regionally restricted euxassay_007889_09
TS23: pancreas Moderate Regionally restricted euxassay_007889_09
TS23: nasal septum Moderate Regionally restricted euxassay_007889_09
Specimen euxassay_007889_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_10
TS23: lung Strong Regionally restricted euxassay_007889_10
TS23: midgut Moderate Regionally restricted euxassay_007889_10
TS23: stomach Moderate Regionally restricted euxassay_007889_10
TS23: clavicle Moderate Regionally restricted euxassay_007889_10
TS23: thyroid gland Strong Regionally restricted euxassay_007889_10
TS23: pancreas Moderate Regionally restricted euxassay_007889_10
TS23: nasal septum Moderate Regionally restricted euxassay_007889_10
Specimen euxassay_007889_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_007889_11
TS23: rectum Strong Regionally restricted euxassay_007889_11
TS23: hindgut Moderate Regionally restricted euxassay_007889_11
TS23: midgut Moderate Regionally restricted euxassay_007889_11
TS23: thyroid gland Strong Regionally restricted euxassay_007889_11
TS23: bladder fundus Strong Regionally restricted euxassay_007889_11
TS23: urethra Strong Regionally restricted euxassay_007889_11 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: thoracic intervertebral disc Moderate Regionally restricted euxassay_007889_11
TS23: sacral vertebral cartilage condensation Moderate Regionally restricted euxassay_007889_11
TS23: lumbar intervertebral disc Moderate Regionally restricted euxassay_007889_11
TS23: nasal septum Moderate Regionally restricted euxassay_007889_11
Specimen euxassay_007889_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_007889_12
TS23: hindgut Moderate Regionally restricted euxassay_007889_12
TS23: midgut Moderate Regionally restricted euxassay_007889_12
TS23: bladder fundus Strong Regionally restricted euxassay_007889_12
TS23: urethra Strong Regionally restricted euxassay_007889_12 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: thoracic intervertebral disc Moderate Regionally restricted euxassay_007889_12
TS23: sacral vertebral cartilage condensation Moderate Regionally restricted euxassay_007889_12
TS23: lumbar intervertebral disc Moderate Regionally restricted euxassay_007889_12
TS23: cervical intervertebral disc Moderate Regionally restricted euxassay_007889_12
TS23: esophagus Moderate Regionally restricted euxassay_007889_12
TS23: nasal septum Moderate Regionally restricted euxassay_007889_12
Specimen euxassay_007889_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_13
TS23: lung Strong Regionally restricted euxassay_007889_13
TS23: hindgut Moderate Regionally restricted euxassay_007889_13
TS23: midgut Moderate Regionally restricted euxassay_007889_13
TS23: cervical intervertebral disc Moderate Regionally restricted euxassay_007889_13
TS23: lumbar intervertebral disc Moderate Regionally restricted euxassay_007889_13
TS23: sacral vertebral cartilage condensation Moderate Regionally restricted euxassay_007889_13
TS23: thoracic intervertebral disc Moderate Regionally restricted euxassay_007889_13
TS23: esophagus Moderate Regionally restricted euxassay_007889_13
TS23: trachea Moderate Regionally restricted euxassay_007889_13
TS23: nasal septum Moderate Regionally restricted euxassay_007889_13
Specimen euxassay_007889_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_14
TS23: lung Strong Regionally restricted euxassay_007889_14
TS23: midgut Moderate Regionally restricted euxassay_007889_14
TS23: thyroid gland Moderate Regionally restricted euxassay_007889_14
TS23: pancreas Moderate Regionally restricted euxassay_007889_14
TS23: cervical intervertebral disc Moderate Regionally restricted euxassay_007889_14
TS23: lumbar intervertebral disc Moderate Regionally restricted euxassay_007889_14
TS23: thoracic intervertebral disc Moderate Regionally restricted euxassay_007889_14
TS23: esophagus Moderate Regionally restricted euxassay_007889_14
TS23: nasal septum Moderate Regionally restricted euxassay_007889_14
Specimen euxassay_007889_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_15
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007889_15
TS23: renal calyx Weak Regionally restricted euxassay_007889_15
TS23: lung Strong Regionally restricted euxassay_007889_15
TS23: midgut Moderate Regionally restricted euxassay_007889_15
TS23: submandibular gland primordium Strong Regionally restricted euxassay_007889_15
TS23: hip Moderate Regionally restricted euxassay_007889_15
TS23: otic capsule Moderate Regionally restricted euxassay_007889_15
TS23: clavicle Strong Regionally restricted euxassay_007889_15
TS23: thyroid gland Moderate Regionally restricted euxassay_007889_15
TS23: pancreas Moderate Regionally restricted euxassay_007889_15
Specimen euxassay_007889_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_16
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007889_16
TS23: renal pelvis Weak Regionally restricted euxassay_007889_16
TS23: lung Strong Regionally restricted euxassay_007889_16
TS23: midgut Moderate Regionally restricted euxassay_007889_16
TS23: submandibular gland primordium Strong Regionally restricted euxassay_007889_16
TS23: hip Weak Regionally restricted euxassay_007889_16
TS23: otic capsule Moderate Regionally restricted euxassay_007889_16
TS23: clavicle Weak Regionally restricted euxassay_007889_16
TS23: femur Moderate Regionally restricted euxassay_007889_16
Specimen euxassay_007889_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_17
TS23: orbito-sphenoid Strong Regionally restricted euxassay_007889_17
TS23: turbinate bone primordium Strong Regionally restricted euxassay_007889_17
TS23: renal pelvis Strong Regionally restricted euxassay_007889_17
TS23: lung Strong Regionally restricted euxassay_007889_17
TS23: midgut Moderate Regionally restricted euxassay_007889_17
TS23: submandibular gland primordium Strong Regionally restricted euxassay_007889_17
TS23: otic capsule Moderate Regionally restricted euxassay_007889_17
TS23: femur Weak Regionally restricted euxassay_007889_17
Specimen euxassay_007889_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_007889_18
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_007889_18
TS23: exoccipital bone Moderate Regionally restricted euxassay_007889_18
TS23: vibrissa Strong Regionally restricted euxassay_007889_18
TS23: renal calyx Strong Regionally restricted euxassay_007889_18
TS23: lung Strong Regionally restricted euxassay_007889_18
TS23: midgut Moderate Regionally restricted euxassay_007889_18
TS23: submandibular gland primordium Strong Regionally restricted euxassay_007889_18
TS23: otic capsule Moderate Regionally restricted euxassay_007889_18
Specimen euxassay_007889_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_007889_19
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_007889_19
TS23: exoccipital bone Moderate Regionally restricted euxassay_007889_19
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_007889_19
TS23: vibrissa Strong Regionally restricted euxassay_007889_19
TS23: lung Strong Regionally restricted euxassay_007889_19
TS23: midgut Moderate Regionally restricted euxassay_007889_19
TS23: humerus Strong Regionally restricted euxassay_007889_19
TS23: tarsus Weak Regionally restricted euxassay_007889_19
TS23: hindlimb digit 1 metatarsal Weak Regionally restricted euxassay_007889_19
TS23: hindlimb digit 2 metatarsal Weak Regionally restricted euxassay_007889_19
TS23: hindlimb digit 5 metatarsal Weak Regionally restricted euxassay_007889_19
Specimen euxassay_007889_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_007889_20
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007889_20
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_007889_20
TS23: exoccipital bone Moderate Regionally restricted euxassay_007889_20
TS23: vibrissa Strong Regionally restricted euxassay_007889_20
TS23: cornea epithelium Weak Regionally restricted euxassay_007889_20
TS23: lung Strong Regionally restricted euxassay_007889_20
TS23: humerus Strong Regionally restricted euxassay_007889_20
TS23: tarsus Weak Regionally restricted euxassay_007889_20
TS23: hindlimb digit 2 metatarsal Weak Regionally restricted euxassay_007889_20
TS23: hindlimb digit 3 metatarsal Weak Regionally restricted euxassay_007889_20
TS23: hindlimb digit 4 metatarsal Weak Regionally restricted euxassay_007889_20
Specimen euxassay_007889_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_007889_21
TS23: exoccipital bone Weak Regionally restricted euxassay_007889_21
TS23: temporal bone petrous part Weak Regionally restricted euxassay_007889_21
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007889_21
TS23: vibrissa Weak Regionally restricted euxassay_007889_21
TS23: cornea epithelium Weak Regionally restricted euxassay_007889_21
TS23: lung Moderate Regionally restricted euxassay_007889_21
TS23: humerus Weak Regionally restricted euxassay_007889_21
Specimen euxassay_007889_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: temporal bone petrous part Weak Regionally restricted euxassay_007889_22
TS23: orbito-sphenoid Weak Regionally restricted euxassay_007889_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory