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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827916
Gene symbol: Scx
Gene name: scleraxis scleraxis bHLH transcription factor
Probe: T55173
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019484_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_01
TS23: embryo mesenchyme Strong Regionally restricted euxassay_019484_01
TS23: hand mesenchyme Strong Regionally restricted euxassay_019484_01
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_019484_01
Specimen euxassay_019484_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_02
TS23: embryo mesenchyme Strong Regionally restricted euxassay_019484_02
TS23: hand mesenchyme Strong Regionally restricted euxassay_019484_02
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_019484_02
Specimen euxassay_019484_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_03
TS23: embryo mesenchyme Strong Regionally restricted euxassay_019484_03
TS23: foot mesenchyme Strong Regionally restricted euxassay_019484_03
TS23: hand mesenchyme Strong Regionally restricted euxassay_019484_03
TS23: lung Weak Regionally restricted euxassay_019484_03
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_019484_03
Specimen euxassay_019484_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_04
TS23: embryo mesenchyme Strong Regionally restricted euxassay_019484_04
TS23: foot mesenchyme Strong Regionally restricted euxassay_019484_04
TS23: hand mesenchyme Moderate Regionally restricted euxassay_019484_04
TS23: lung Weak Regionally restricted euxassay_019484_04
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_019484_04
Specimen euxassay_019484_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_05
TS23: embryo mesenchyme Strong Regionally restricted euxassay_019484_05
TS23: foot mesenchyme Moderate Regionally restricted euxassay_019484_05
TS23: hand mesenchyme Moderate Regionally restricted euxassay_019484_05
TS23: lung Weak Regionally restricted euxassay_019484_05
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_019484_05
Specimen euxassay_019484_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_06
TS23: embryo mesenchyme Strong Regionally restricted euxassay_019484_06
TS23: hindlimb digit 1 phalanx Moderate Regionally restricted euxassay_019484_06
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_019484_06
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_019484_06
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_019484_06
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_019484_06
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_019484_06
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_019484_06
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_019484_06
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_019484_06
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_019484_06
TS23: lung Weak Regionally restricted euxassay_019484_06
Specimen euxassay_019484_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_07
TS23: embryo mesenchyme Strong Regionally restricted euxassay_019484_07
TS23: diaphragm Weak Regionally restricted euxassay_019484_07
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_019484_07
TS23: hindlimb digit 1 phalanx Moderate Regionally restricted euxassay_019484_07
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_019484_07
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_019484_07
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_019484_07
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_019484_07
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_019484_07
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_019484_07
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_019484_07
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_019484_07
TS23: turbinate bone primordium Weak Regionally restricted euxassay_019484_07
TS23: lung Weak Regionally restricted euxassay_019484_07
Specimen euxassay_019484_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_08
TS23: embryo mesenchyme Strong Regionally restricted euxassay_019484_08
TS23: diaphragm Weak Regionally restricted euxassay_019484_08
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_019484_08
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_019484_08
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_019484_08
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_019484_08
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_019484_08
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_019484_08
TS23: turbinate bone primordium Weak Regionally restricted euxassay_019484_08
TS23: lung Weak Regionally restricted euxassay_019484_08
Specimen euxassay_019484_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_09
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_019484_09
TS23: diaphragm Weak Regionally restricted euxassay_019484_09
TS23: turbinate bone primordium Weak Regionally restricted euxassay_019484_09
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_019484_09
TS23: heart valve Weak Regionally restricted euxassay_019484_09
TS23: lung Weak Regionally restricted euxassay_019484_09
Specimen euxassay_019484_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_10
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_019484_10
TS23: diaphragm Weak Regionally restricted euxassay_019484_10
TS23: turbinate bone primordium Weak Regionally restricted euxassay_019484_10
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_019484_10
TS23: heart valve Weak Regionally restricted euxassay_019484_10
TS23: lung Weak Regionally restricted euxassay_019484_10
Specimen euxassay_019484_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Weak Regionally restricted euxassay_019484_11
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_019484_11
TS23: diaphragm Weak Regionally restricted euxassay_019484_11
TS23: heart valve Weak Regionally restricted euxassay_019484_11
Specimen euxassay_019484_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Moderate Regionally restricted euxassay_019484_12
TS23: diaphragm Weak Regionally restricted euxassay_019484_12
TS23: tail mesenchyme Strong Regionally restricted euxassay_019484_12
TS23: heart valve Weak Regionally restricted euxassay_019484_12
TS23: lung Weak Regionally restricted euxassay_019484_12
Specimen euxassay_019484_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Weak Regionally restricted euxassay_019484_13
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_019484_13
TS23: diaphragm Weak Regionally restricted euxassay_019484_13
TS23: tail mesenchyme Strong Regionally restricted euxassay_019484_13
TS23: urethra Weak Regionally restricted euxassay_019484_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: heart valve Weak Regionally restricted euxassay_019484_13
TS23: lung Weak Regionally restricted euxassay_019484_13
Specimen euxassay_019484_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Weak Regionally restricted euxassay_019484_14
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_019484_14
TS23: diaphragm Weak Regionally restricted euxassay_019484_14
TS23: tail mesenchyme Strong Regionally restricted euxassay_019484_14
TS23: urethra Weak Regionally restricted euxassay_019484_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: lung Weak Regionally restricted euxassay_019484_14
Specimen euxassay_019484_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Moderate Regionally restricted euxassay_019484_15
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_019484_15
TS23: diaphragm Weak Regionally restricted euxassay_019484_15
TS23: tail mesenchyme Strong Regionally restricted euxassay_019484_15
TS23: urethra Weak Regionally restricted euxassay_019484_15 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: lung Weak Regionally restricted euxassay_019484_15
Specimen euxassay_019484_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Moderate Regionally restricted euxassay_019484_16
TS23: embryo mesenchyme Strong Regionally restricted euxassay_019484_16
TS23: diaphragm Weak Regionally restricted euxassay_019484_16
TS23: tail mesenchyme Strong Regionally restricted euxassay_019484_16
TS23: turbinate bone primordium Weak Regionally restricted euxassay_019484_16
TS23: lung Weak Regionally restricted euxassay_019484_16
Specimen euxassay_019484_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Moderate Regionally restricted euxassay_019484_17
TS23: embryo mesenchyme Strong Regionally restricted euxassay_019484_17
TS23: diaphragm Moderate Regionally restricted euxassay_019484_17
TS23: tail mesenchyme Strong Regionally restricted euxassay_019484_17
TS23: turbinate bone primordium Weak Regionally restricted euxassay_019484_17
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_019484_17
TS23: lung Weak Regionally restricted euxassay_019484_17
Specimen euxassay_019484_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_18
TS23: embryo mesenchyme Strong Regionally restricted euxassay_019484_18
TS23: turbinate bone primordium Weak Regionally restricted euxassay_019484_18
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_019484_18
TS23: lung Weak Regionally restricted euxassay_019484_18
Specimen euxassay_019484_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_19
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_019484_19
TS23: turbinate bone primordium Weak Regionally restricted euxassay_019484_19
TS23: pelvic girdle skeleton Weak Regionally restricted euxassay_019484_19
TS23: lung Weak Regionally restricted euxassay_019484_19
Specimen euxassay_019484_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_20
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_019484_20
TS23: turbinate bone primordium Weak Regionally restricted euxassay_019484_20
TS23: lung Weak Regionally restricted euxassay_019484_20
Specimen euxassay_019484_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_21
TS23: organ system Moderate Regionally restricted euxassay_019484_21
TS23: foot mesenchyme Moderate Regionally restricted euxassay_019484_21
TS23: hand mesenchyme Moderate Regionally restricted euxassay_019484_21
TS23: lung Weak Regionally restricted euxassay_019484_21
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_019484_21
Specimen euxassay_019484_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_22
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_019484_22
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_019484_22
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_019484_22
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_019484_22
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_019484_22
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_019484_22
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_019484_22
TS23: lung Weak Regionally restricted euxassay_019484_22
TS23: extrinsic ocular muscle Weak Regionally restricted euxassay_019484_22
Specimen euxassay_019484_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019484_23
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_019484_23
TS23: hand mesenchyme Moderate Regionally restricted euxassay_019484_23
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_019484_23
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_019484_23
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_019484_23
TS23: hindlimb digit 1 phalanx Moderate Regionally restricted euxassay_019484_23
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_019484_23
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_019484_23
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_019484_23
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_019484_23
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_019484_23
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_019484_23
TS23: lung Weak Regionally restricted euxassay_019484_23
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_019484_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory