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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827895
Gene symbol: Scg3
Gene name: secretogranin III
Probe: IMAGE clone 475013
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_000012_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Graded euxassay_000012_01
TS23: cerebral cortex marginal layer Strong Graded euxassay_000012_01
Specimen euxassay_000012_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Graded euxassay_000012_02
TS23: cerebral cortex marginal layer Strong Graded euxassay_000012_02
TS23: cerebellum Strong Graded euxassay_000012_02
TS23: trigeminal ganglion Strong Uniform euxassay_000012_02
TS23: neural retina Strong Uniform euxassay_000012_02
Specimen euxassay_000012_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Strong Uniform euxassay_000012_03
TS23: cerebellum intraventricular portion Strong Uniform euxassay_000012_03
TS23: retina Strong Uniform euxassay_000012_03
TS23: neural retina Strong Uniform euxassay_000012_03
TS23: trigeminal ganglion Strong Uniform euxassay_000012_03
TS23: left lung Strong Spotted euxassay_000012_03
TS23: lung Strong Spotted euxassay_000012_03
TS23: cerebral cortex Strong Graded euxassay_000012_03
TS23: cerebral cortex marginal layer Strong Graded euxassay_000012_03
TS23: cerebral cortex mantle layer Strong Graded euxassay_000012_03
TS23: stomach Strong Regionally restricted euxassay_000012_03
Specimen euxassay_000012_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Strong Graded euxassay_000012_04
TS23: cerebral cortex mantle layer Strong Graded euxassay_000012_04
TS23: cerebral cortex marginal layer Strong Graded euxassay_000012_04
TS23: cerebellum Strong Graded euxassay_000012_04
TS23: stomach Moderate Regionally restricted euxassay_000012_04
TS23: lung Strong Spotted euxassay_000012_04
TS23: trigeminal ganglion Strong Uniform euxassay_000012_04
Specimen euxassay_000012_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: forebrain Strong Spotted euxassay_000012_05
TS23: telencephalon Strong Spotted euxassay_000012_05
TS23: cerebral cortex Strong Spotted euxassay_000012_05
TS23: cerebral cortex mantle layer Strong Spotted euxassay_000012_05
TS23: cerebral cortex marginal layer Strong Spotted euxassay_000012_05
TS23: lung Strong Spotted euxassay_000012_05
TS23: trigeminal ganglion Strong Uniform euxassay_000012_05
TS23: stomach Strong Regionally restricted euxassay_000012_05 outer membrane
TS23: vagus ganglion Strong Uniform euxassay_000012_05
TS23: dorsal root ganglion Strong Uniform euxassay_000012_05 cervical posterior
Specimen euxassay_000012_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Strong Uniform euxassay_000012_06
TS23: trigeminal ganglion Strong Uniform euxassay_000012_06
TS23: vestibulo-cochlear ganglion Strong Uniform euxassay_000012_06
TS23: dorsal root ganglion Strong Uniform euxassay_000012_06
TS23: central nervous system Strong Graded euxassay_000012_06
TS23: forebrain Strong Graded euxassay_000012_06
TS23: telencephalon Strong Graded euxassay_000012_06
TS23: cerebral cortex Strong Graded euxassay_000012_06
TS23: cerebral cortex mantle layer Strong Graded euxassay_000012_06
TS23: cerebral cortex marginal layer Strong Graded euxassay_000012_06
TS23: midbrain marginal layer Strong Graded euxassay_000012_06
TS23: midbrain mantle layer Strong Graded euxassay_000012_06
TS23: lung Strong Spotted euxassay_000012_06
TS23: spinal ganglion Strong Uniform euxassay_000012_06
TS23: spinal component of peripheral nervous system Strong Uniform euxassay_000012_06
Specimen euxassay_000012_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Uniform euxassay_000012_07
TS23: spinal ganglion Strong Uniform euxassay_000012_07
TS23: trigeminal ganglion Strong Uniform euxassay_000012_07
TS23: vagus ganglion Strong Uniform euxassay_000012_07
TS23: lung Strong Spotted euxassay_000012_07
TS23: cerebral cortex Strong Graded euxassay_000012_07
TS23: cerebral cortex mantle layer Strong Graded euxassay_000012_07
TS23: cerebral cortex marginal layer Strong Graded euxassay_000012_07
TS23: telencephalon Strong Graded euxassay_000012_07
TS23: midbrain lateral wall Strong Uniform euxassay_000012_07
TS23: midbrain mantle layer Strong Uniform euxassay_000012_07
TS23: midbrain marginal layer Strong Uniform euxassay_000012_07
Specimen euxassay_000012_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Uniform euxassay_000012_08
TS23: spinal ganglion Strong Uniform euxassay_000012_08
TS23: cerebellum Strong Graded euxassay_000012_08
TS23: cerebral cortex marginal layer Strong Graded euxassay_000012_08
TS23: cerebral cortex mantle layer Strong Graded euxassay_000012_08
TS23: cerebral cortex Strong Graded euxassay_000012_08
TS23: lung Strong Spotted euxassay_000012_08
TS23: midbrain lateral wall Strong Spotted euxassay_000012_08
TS23: midbrain mantle layer Strong Spotted euxassay_000012_08
TS23: midbrain marginal layer Strong Spotted euxassay_000012_08
TS23: gut Moderate Regionally restricted euxassay_000012_08 epithelium adjacent to the digestive system
TS23: adrenal medulla Moderate Spotted euxassay_000012_08
TS23: adrenal gland Moderate Spotted euxassay_000012_08
TS23: trigeminal nerve Strong Uniform euxassay_000012_08
TS23: trigeminal nerve maxillary division Strong Uniform euxassay_000012_08
Specimen euxassay_000012_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain Strong Uniform euxassay_000012_09
TS23: cerebellum Strong Uniform euxassay_000012_09
TS23: cerebral cortex marginal layer Strong Graded euxassay_000012_09
TS23: cerebral cortex mantle layer Strong Graded euxassay_000012_09
TS23: cerebral cortex Strong Graded euxassay_000012_09
TS23: midbrain Strong Graded euxassay_000012_09
TS23: midbrain lateral wall Strong Graded euxassay_000012_09
TS23: midbrain mantle layer Strong Graded euxassay_000012_09
TS23: midbrain marginal layer Strong Graded euxassay_000012_09
TS23: spinal component of peripheral nervous system Strong Uniform euxassay_000012_09
TS23: spinal ganglion Strong Uniform euxassay_000012_09
TS23: dorsal root ganglion Strong Uniform euxassay_000012_09
TS23: trigeminal ganglion Strong Uniform euxassay_000012_09
TS23: heart Weak Single cells euxassay_000012_09
TS23: trigeminal nerve Strong Uniform euxassay_000012_09
TS23: trigeminal nerve maxillary division Strong Uniform euxassay_000012_09
TS23: spinal cord mantle layer Strong Uniform euxassay_000012_09
TS23: basal columns Strong Uniform euxassay_000012_09
TS23: autonomic nervous system Strong Uniform euxassay_000012_09
TS23: sympathetic nervous system Strong Uniform euxassay_000012_09
TS23: cervico-thoracic ganglion Strong Uniform euxassay_000012_09
TS23: thoracic ganglion Strong Uniform euxassay_000012_09
TS23: cervical ganglion Strong Uniform euxassay_000012_09
Specimen euxassay_000012_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Strong Graded euxassay_000012_10
TS23: forebrain Strong Graded euxassay_000012_10
TS23: diencephalon Strong Graded euxassay_000012_10
TS23: telencephalon Strong Graded euxassay_000012_10
TS23: cerebral cortex Strong Graded euxassay_000012_10
TS23: cerebral cortex mantle layer Strong Graded euxassay_000012_10
TS23: cerebral cortex marginal layer Strong Graded euxassay_000012_10
TS23: midbrain Strong Graded euxassay_000012_10
TS23: midbrain lateral wall Strong Graded euxassay_000012_10
TS23: midbrain mantle layer Strong Graded euxassay_000012_10
TS23: midbrain marginal layer Strong Graded euxassay_000012_10
TS23: adrenal gland Moderate Regionally restricted euxassay_000012_10
TS23: heart Weak Single cells euxassay_000012_10
TS23: thoracic ganglion Strong Uniform euxassay_000012_10
TS23: cervico-thoracic ganglion Strong Uniform euxassay_000012_10
TS23: cervical ganglion Strong Uniform euxassay_000012_10
TS23: sympathetic ganglion Strong Uniform euxassay_000012_10
TS23: sympathetic nervous system Strong Uniform euxassay_000012_10
TS23: basal columns Strong Uniform euxassay_000012_10
Specimen euxassay_000012_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain lateral wall Strong Regionally restricted euxassay_000012_11
TS23: midbrain marginal layer Strong Regionally restricted euxassay_000012_11
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_000012_11
TS23: cerebral cortex Strong Regionally restricted euxassay_000012_11
TS23: spinal cord Moderate Uniform euxassay_000012_11
TS23: spinal cord lateral wall Moderate Uniform euxassay_000012_11
TS23: lung Strong Spotted euxassay_000012_11
TS23: cerebellum Strong Uniform euxassay_000012_11
TS23: trigeminal ganglion Strong Regionally restricted euxassay_000012_11
TS23: heart Weak Single cells euxassay_000012_11
Specimen euxassay_000012_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain Strong Regionally restricted euxassay_000012_12
TS23: cerebellum Strong Regionally restricted euxassay_000012_12
TS23: midbrain Strong Regionally restricted euxassay_000012_12
TS23: midbrain lateral wall Strong Regionally restricted euxassay_000012_12
TS23: midbrain marginal layer Strong Regionally restricted euxassay_000012_12
TS23: cerebral cortex Strong Regionally restricted euxassay_000012_12
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_000012_12
TS23: spinal cord Strong Uniform euxassay_000012_12
TS23: spinal cord lateral wall Strong Uniform euxassay_000012_12
TS23: spinal nerve plexus Strong Uniform euxassay_000012_12
TS23: spinal ganglion Strong Uniform euxassay_000012_12
Specimen euxassay_000012_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: heart Weak Single cells euxassay_000012_13
TS23: forebrain Strong Regionally restricted euxassay_000012_13
TS23: telencephalon Strong Regionally restricted euxassay_000012_13
TS23: cerebral cortex Strong Regionally restricted euxassay_000012_13
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_000012_13
TS23: midbrain marginal layer Strong Regionally restricted euxassay_000012_13
TS23: midbrain lateral wall Strong Regionally restricted euxassay_000012_13
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_000012_13
TS23: vagus ganglion Strong Regionally restricted euxassay_000012_13
TS23: cerebellum Strong Uniform euxassay_000012_13
TS23: spinal component of peripheral nervous system Strong Uniform euxassay_000012_13
TS23: spinal nerve plexus Strong Uniform euxassay_000012_13
Specimen euxassay_000012_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Strong Regionally restricted euxassay_000012_14
TS23: midbrain lateral wall Strong Regionally restricted euxassay_000012_14
TS23: midbrain marginal layer Strong Regionally restricted euxassay_000012_14
TS23: midbrain mantle layer Strong Regionally restricted euxassay_000012_14
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_000012_14
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_000012_14
TS23: cerebral cortex Strong Regionally restricted euxassay_000012_14
TS23: dorsal root ganglion Strong Uniform euxassay_000012_14
TS23: spinal ganglion Strong Uniform euxassay_000012_14
TS23: spinal component of peripheral nervous system Strong Uniform euxassay_000012_14
TS23: heart Weak Single cells euxassay_000012_14
TS23: glossopharyngeal ganglion Strong Uniform euxassay_000012_14
TS23: vagus ganglion Strong Uniform euxassay_000012_14
TS23: lung Moderate Spotted euxassay_000012_14
TS23: adrenal gland Moderate Regionally restricted euxassay_000012_14
Specimen euxassay_000012_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Strong Regionally restricted euxassay_000012_15
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_000012_15
TS23: vagus ganglion Strong Regionally restricted euxassay_000012_15
TS23: dorsal root ganglion Strong Regionally restricted euxassay_000012_15
TS23: midbrain marginal layer Strong Regionally restricted euxassay_000012_15
TS23: midbrain lateral wall Strong Regionally restricted euxassay_000012_15
TS23: lung Moderate Spotted euxassay_000012_15
TS23: spinal component of peripheral nervous system Strong Uniform euxassay_000012_15
TS23: facial ganglion Strong Regionally restricted euxassay_000012_15
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_000012_15
Specimen euxassay_000012_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: facial ganglion Strong Uniform euxassay_000012_16
TS23: glossopharyngeal ganglion Strong Uniform euxassay_000012_16
TS23: trigeminal ganglion Strong Uniform euxassay_000012_16
TS23: vagus ganglion Strong Uniform euxassay_000012_16
TS23: vestibulo-cochlear ganglion Strong Uniform euxassay_000012_16
TS23: spinal component of peripheral nervous system Strong Uniform euxassay_000012_16
TS23: dorsal root ganglion Strong Uniform euxassay_000012_16
TS23: cranial ganglion Strong Uniform euxassay_000012_16
TS23: central nervous system ganglion Strong Uniform euxassay_000012_16
TS23: lung Moderate Spotted euxassay_000012_16
TS23: metanephros Moderate Spotted euxassay_000012_16
TS23: adrenal gland Moderate Spotted euxassay_000012_16
TS23: adrenal medulla Moderate Spotted euxassay_000012_16
TS23: cerebral cortex Strong Regionally restricted euxassay_000012_16
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_000012_16
TS23: midbrain lateral wall Strong Regionally restricted euxassay_000012_16
TS23: urinary system Strong Uniform euxassay_000012_16
TS23: bladder Strong Uniform euxassay_000012_16
Specimen euxassay_000012_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cranial ganglion Strong Uniform euxassay_000012_17
TS23: facial ganglion Strong Uniform euxassay_000012_17
TS23: trigeminal ganglion Strong Uniform euxassay_000012_17
TS23: vagus ganglion Strong Uniform euxassay_000012_17
TS23: vestibulo-cochlear ganglion Strong Uniform euxassay_000012_17
TS23: glossopharyngeal ganglion Strong Uniform euxassay_000012_17
TS23: midbrain lateral wall Strong Graded euxassay_000012_17
TS23: cerebral cortex marginal layer Strong Graded euxassay_000012_17
TS23: cerebral cortex mantle layer Strong Graded euxassay_000012_17
TS23: cerebral cortex Strong Graded euxassay_000012_17
TS23: lung Moderate Spotted euxassay_000012_17
TS23: dorsal root ganglion Strong Uniform euxassay_000012_17
TS23: spinal ganglion Strong Uniform euxassay_000012_17
TS23: heart Weak Single cells euxassay_000012_17
Specimen euxassay_000012_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Graded euxassay_000012_20
TS23: cerebral cortex Strong Graded euxassay_000012_20
TS23: trigeminal ganglion Strong Uniform euxassay_000012_20
TS23: lung Moderate Spotted euxassay_000012_20
TS23: cerebellum Strong Regionally restricted euxassay_000012_20
Specimen euxassay_000012_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Strong Graded euxassay_000012_21
TS23: cerebral cortex marginal layer Strong Graded euxassay_000012_21
TS23: cerebellum Strong Graded euxassay_000012_21
TS23: trigeminal ganglion Strong Graded euxassay_000012_21
TS23: lung Weak Spotted euxassay_000012_21
Specimen euxassay_000012_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Spotted euxassay_000012_22
TS23: cerebral cortex marginal layer Strong Graded euxassay_000012_22
TS23: cerebral cortex Strong Graded euxassay_000012_22
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Send questions and comments to User Support. 		last database update
05/21/2024
MGI 6.23 		The Jackson Laboratory