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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827859
Gene symbol: Sall3
Gene name: spalt like transcription factor 3
Probe: T38908
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_010911_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: utricle Strong Regionally restricted euxassay_010911_03
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010911_03
Specimen euxassay_010911_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: utricle Strong Regionally restricted euxassay_010911_04
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010911_04
Specimen euxassay_010911_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: utricle Strong Regionally restricted euxassay_010911_05
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010911_05
Specimen euxassay_010911_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: utricle Strong Regionally restricted euxassay_010911_06
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010911_06
TS23: medulla oblongata Moderate Regionally restricted euxassay_010911_06
Specimen euxassay_010911_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: utricle Strong Regionally restricted euxassay_010911_07
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_07
TS23: telencephalon mantle layer Moderate Single cells euxassay_010911_07
TS23: midbrain mantle layer Moderate Single cells euxassay_010911_07
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010911_07
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010911_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010911_07
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010911_07
Specimen euxassay_010911_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Strong Regionally restricted euxassay_010911_08
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_08
TS23: telencephalon mantle layer Moderate Single cells euxassay_010911_08
TS23: midbrain mantle layer Moderate Single cells euxassay_010911_08
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010911_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010911_08
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010911_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_010911_08
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010911_08
TS23: upper lip Moderate Regionally restricted euxassay_010911_08
TS23: lower lip Moderate Regionally restricted euxassay_010911_08
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010911_08
TS23: maturing glomerular tuft Moderate Regionally restricted euxassay_010911_08
TS23: heart valve Moderate Regionally restricted euxassay_010911_08
Specimen euxassay_010911_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_09
TS23: telencephalon mantle layer Moderate Single cells euxassay_010911_09
TS23: midbrain mantle layer Moderate Single cells euxassay_010911_09
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010911_09
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_010911_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_010911_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010911_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010911_09
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010911_09
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010911_09
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_010911_09
TS23: lower lip Moderate Regionally restricted euxassay_010911_09
TS23: upper lip Moderate Regionally restricted euxassay_010911_09
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010911_09
TS23: maturing glomerular tuft Moderate Regionally restricted euxassay_010911_09
TS23: heart valve Moderate Regionally restricted euxassay_010911_09
Specimen euxassay_010911_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_10
TS23: telencephalon mantle layer Moderate Single cells euxassay_010911_10
TS23: midbrain mantle layer Moderate Single cells euxassay_010911_10
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010911_10
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_010911_10
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010911_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010911_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_010911_10
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_010911_10
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010911_10
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010911_10
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010911_10
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_010911_10
TS23: maturing glomerular tuft Moderate Regionally restricted euxassay_010911_10
TS23: heart valve Moderate Regionally restricted euxassay_010911_10
TS23: palatal shelf Moderate Regionally restricted euxassay_010911_10
Specimen euxassay_010911_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_11
TS23: telencephalon mantle layer Moderate Single cells euxassay_010911_11
TS23: midbrain mantle layer Moderate Single cells euxassay_010911_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010911_11
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010911_11
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_010911_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010911_11
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010911_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_010911_11
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010911_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010911_11
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_010911_11
TS23: heart valve Moderate Regionally restricted euxassay_010911_11
TS23: palatal shelf Moderate Regionally restricted euxassay_010911_11
Specimen euxassay_010911_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010911_12
TS23: midbrain mantle layer Moderate Single cells euxassay_010911_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010911_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_010911_12
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010911_12
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_010911_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010911_12
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010911_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_010911_12
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010911_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010911_12
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_010911_12
TS23: heart valve Moderate Regionally restricted euxassay_010911_12
Specimen euxassay_010911_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_13
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010911_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_010911_13
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010911_13
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_010911_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010911_13
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010911_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_010911_13
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010911_13
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010911_13
Specimen euxassay_010911_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010911_14
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_010911_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_010911_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010911_14
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010911_14
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010911_14
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_010911_14
TS23: palatal shelf Moderate Regionally restricted euxassay_010911_14
Specimen euxassay_010911_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Strong Regionally restricted euxassay_010911_15
TS23: midbrain mantle layer Moderate Single cells euxassay_010911_15
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010911_15
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_010911_15
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010911_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010911_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_010911_15
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010911_15
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_010911_15
Specimen euxassay_010911_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cochlea Strong Regionally restricted euxassay_010911_16
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_16
TS23: telencephalon mantle layer Moderate Single cells euxassay_010911_16
TS23: midbrain mantle layer Moderate Single cells euxassay_010911_16
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_010911_16
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_010911_16
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010911_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010911_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_010911_16
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010911_16
TS23: glans of male genital tubercle Moderate Regionally restricted euxassay_010911_16
Specimen euxassay_010911_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: utricle Strong Regionally restricted euxassay_010911_17
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_17
TS23: telencephalon mantle layer Moderate Single cells euxassay_010911_17
TS23: midbrain mantle layer Moderate Single cells euxassay_010911_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_010911_17
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010911_17
Specimen euxassay_010911_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: utricle Strong Regionally restricted euxassay_010911_18
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_18
TS23: midbrain mantle layer Moderate Single cells euxassay_010911_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_010911_18
TS23: lower lip Moderate Regionally restricted euxassay_010911_18
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010911_18
TS23: maturing glomerular tuft Moderate Regionally restricted euxassay_010911_18
Specimen euxassay_010911_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: utricle Strong Regionally restricted euxassay_010911_19
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_19
TS23: telencephalon mantle layer Moderate Single cells euxassay_010911_19
TS23: lower lip Moderate Regionally restricted euxassay_010911_19
TS23: upper lip Moderate Regionally restricted euxassay_010911_19
TS23: maturing glomerular tuft Moderate Regionally restricted euxassay_010911_19
Specimen euxassay_010911_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: inner ear Strong Regionally restricted euxassay_010911_20
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_20
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010911_20
Specimen euxassay_010911_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: inner ear Strong Regionally restricted euxassay_010911_21
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_21
Specimen euxassay_010911_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_22
Specimen euxassay_010911_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_010911_23
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010911_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory