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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827835
Gene symbol: Runx1
Gene name: runt related transcription factor 1
Probe: T55169
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S9 - Runx1: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: liver Present Single cells Expression is present in single cells in which the intercellular distance between stained cells is much larger than the cell diameter of an individual cell. A thumbnail photo of the staining is contained in the table.
Specimen euxassay_019458_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_019458_01
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_019458_01
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_019458_01
Specimen euxassay_019458_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_019458_02
TS23: mandible Moderate Regionally restricted euxassay_019458_02
TS23: maxilla Moderate Regionally restricted euxassay_019458_02
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_019458_02
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_019458_02
TS23: cornea epithelium Strong Regionally restricted euxassay_019458_02
Specimen euxassay_019458_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_019458_03
TS23: maxilla Moderate Regionally restricted euxassay_019458_03
TS23: mandible Moderate Regionally restricted euxassay_019458_03
TS23: vibrissa Strong Regionally restricted euxassay_019458_03
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_019458_03
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019458_03
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_019458_03
TS23: cornea epithelium Strong Regionally restricted euxassay_019458_03
Specimen euxassay_019458_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_019458_04
TS23: maxilla Moderate Regionally restricted euxassay_019458_04
TS23: mandible Moderate Regionally restricted euxassay_019458_04
TS23: vibrissa Strong Regionally restricted euxassay_019458_04
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_019458_04
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019458_04
TS23: facial ganglion Strong Regionally restricted euxassay_019458_04
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_019458_04
TS23: tibia Moderate Regionally restricted euxassay_019458_04
TS23: fibula Moderate Regionally restricted euxassay_019458_04
TS23: cornea epithelium Strong Regionally restricted euxassay_019458_04
Specimen euxassay_019458_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_019458_05
TS23: maxilla Moderate Regionally restricted euxassay_019458_05
TS23: mandible Moderate Regionally restricted euxassay_019458_05
TS23: vibrissa Strong Regionally restricted euxassay_019458_05
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019458_05
TS23: facial ganglion Strong Regionally restricted euxassay_019458_05
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_019458_05
TS23: tibia Weak Regionally restricted euxassay_019458_05
TS23: fibula Weak Regionally restricted euxassay_019458_05
TS23: femur Weak Regionally restricted euxassay_019458_05
TS23: stomach Weak Regionally restricted euxassay_019458_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019458_05
Specimen euxassay_019458_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019458_06
TS23: maxilla Moderate Regionally restricted euxassay_019458_06
TS23: mandible Moderate Regionally restricted euxassay_019458_06
TS23: lower jaw incisor Strong Regionally restricted euxassay_019458_06
TS23: upper jaw incisor Strong Regionally restricted euxassay_019458_06
TS23: vibrissa Strong Regionally restricted euxassay_019458_06
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019458_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_019458_06
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_019458_06
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_019458_06
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_019458_06
TS23: femur Weak Regionally restricted euxassay_019458_06
TS23: stomach Weak Regionally restricted euxassay_019458_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_019458_06 trigeminal motor nucleus
Specimen euxassay_019458_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019458_07
TS23: axial skeleton Weak Regionally restricted euxassay_019458_07
TS23: maxilla Moderate Regionally restricted euxassay_019458_07
TS23: mandible Moderate Regionally restricted euxassay_019458_07
TS23: vibrissa Strong Regionally restricted euxassay_019458_07
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019458_07
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_019458_07
TS23: femur Weak Regionally restricted euxassay_019458_07
TS23: hindlimb digit 1 phalanx Moderate Regionally restricted euxassay_019458_07
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_019458_07
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_019458_07
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_019458_07
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_019458_07
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_019458_07
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_019458_07
TS23: stomach Moderate Regionally restricted euxassay_019458_07
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019458_07
TS23: clavicle Strong Regionally restricted euxassay_019458_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_019458_07 trigeminal motor nucleus
Specimen euxassay_019458_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019458_08
TS23: maxilla Moderate Regionally restricted euxassay_019458_08
TS23: mandible Moderate Regionally restricted euxassay_019458_08
TS23: vibrissa Strong Regionally restricted euxassay_019458_08
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019458_08
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_019458_08
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019458_08
TS23: hindlimb digit 3 metatarsal Strong Regionally restricted euxassay_019458_08
TS23: hindlimb digit 4 metatarsal Strong Regionally restricted euxassay_019458_08
TS23: hindlimb digit 5 metatarsal Strong Regionally restricted euxassay_019458_08
TS23: hindlimb digit 2 metatarsal Strong Regionally restricted euxassay_019458_08
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_019458_08
TS23: stomach Weak Regionally restricted euxassay_019458_08
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019458_08
TS23: clavicle Strong Regionally restricted euxassay_019458_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019458_08
Specimen euxassay_019458_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019458_09
TS23: axial skeleton Weak Regionally restricted euxassay_019458_09
TS23: maxilla Strong Regionally restricted euxassay_019458_09
TS23: mandible Strong Regionally restricted euxassay_019458_09
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019458_09
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_019458_09
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019458_09
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019458_09
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019458_09
TS23: clavicle Strong Regionally restricted euxassay_019458_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019458_09
TS23: olfactory epithelium Strong Regionally restricted euxassay_019458_09
Specimen euxassay_019458_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019458_10
TS23: upper jaw incisor Strong Regionally restricted euxassay_019458_10
TS23: maxilla Strong Regionally restricted euxassay_019458_10
TS23: lower jaw incisor Strong Regionally restricted euxassay_019458_10
TS23: mandible Strong Regionally restricted euxassay_019458_10
TS23: basisphenoid bone Weak Regionally restricted euxassay_019458_10
TS23: basioccipital bone Weak Regionally restricted euxassay_019458_10
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019458_10
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019458_10
TS23: clavicle Strong Regionally restricted euxassay_019458_10
TS23: thymus primordium Strong Regionally restricted euxassay_019458_10
TS23: thyroid cartilage Strong Regionally restricted euxassay_019458_10
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019458_10
TS23: olfactory epithelium Strong Regionally restricted euxassay_019458_10
Specimen euxassay_019458_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019458_11
TS23: upper jaw incisor Strong Regionally restricted euxassay_019458_11
TS23: maxilla Strong Regionally restricted euxassay_019458_11
TS23: lower jaw incisor Strong Regionally restricted euxassay_019458_11
TS23: mandible Strong Regionally restricted euxassay_019458_11
TS23: basisphenoid bone Moderate Regionally restricted euxassay_019458_11
TS23: basioccipital bone Moderate Regionally restricted euxassay_019458_11
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019458_11
TS23: thymus primordium Strong Regionally restricted euxassay_019458_11
TS23: thyroid cartilage Strong Regionally restricted euxassay_019458_11
TS23: cricoid cartilage Strong Regionally restricted euxassay_019458_11
TS23: larynx Strong Regionally restricted euxassay_019458_11
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019458_11
TS23: olfactory epithelium Strong Regionally restricted euxassay_019458_11
Specimen euxassay_019458_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Strong Regionally restricted euxassay_019458_12
TS23: mandible Strong Regionally restricted euxassay_019458_12
TS23: lower jaw incisor Strong Regionally restricted euxassay_019458_12
TS23: maxilla Strong Regionally restricted euxassay_019458_12
TS23: upper jaw incisor Strong Regionally restricted euxassay_019458_12
TS23: basioccipital bone Moderate Regionally restricted euxassay_019458_12
TS23: basisphenoid bone Moderate Regionally restricted euxassay_019458_12
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_019458_12
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019458_12
TS23: thymus primordium Strong Regionally restricted euxassay_019458_12
TS23: thyroid cartilage Strong Regionally restricted euxassay_019458_12
TS23: larynx Strong Regionally restricted euxassay_019458_12
TS23: trachea Strong Regionally restricted euxassay_019458_12
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019458_12
TS23: olfactory epithelium Strong Regionally restricted euxassay_019458_12
Specimen euxassay_019458_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Strong Regionally restricted euxassay_019458_13
TS23: lower jaw incisor Moderate Regionally restricted euxassay_019458_13
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019458_13
TS23: thymus primordium Strong Regionally restricted euxassay_019458_13
TS23: thyroid cartilage Weak Regionally restricted euxassay_019458_13
TS23: cricoid cartilage Weak Regionally restricted euxassay_019458_13
TS23: trachea Moderate Regionally restricted euxassay_019458_13
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019458_13
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019458_13
Specimen euxassay_019458_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Strong Regionally restricted euxassay_019458_14
TS23: axial skeleton Moderate Regionally restricted euxassay_019458_14
TS23: upper jaw incisor Strong Regionally restricted euxassay_019458_14
TS23: maxilla Strong Regionally restricted euxassay_019458_14
TS23: lower jaw incisor Strong Regionally restricted euxassay_019458_14
TS23: mandible Strong Regionally restricted euxassay_019458_14
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019458_14
TS23: thymus primordium Strong Regionally restricted euxassay_019458_14
TS23: olfactory epithelium Strong Regionally restricted euxassay_019458_14
Specimen euxassay_019458_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: sternum Strong Regionally restricted euxassay_019458_15
TS23: axial skeleton Moderate Regionally restricted euxassay_019458_15
TS23: upper jaw incisor Strong Regionally restricted euxassay_019458_15
TS23: lower jaw incisor Strong Regionally restricted euxassay_019458_15
TS23: maxilla Strong Regionally restricted euxassay_019458_15
TS23: mandible Strong Regionally restricted euxassay_019458_15
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019458_15
TS23: clavicle Strong Regionally restricted euxassay_019458_15
TS23: axial skeleton tail region Strong Regionally restricted euxassay_019458_15
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019458_15
TS23: olfactory epithelium Strong Regionally restricted euxassay_019458_15
Specimen euxassay_019458_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: axial skeleton Moderate Regionally restricted euxassay_019458_16
TS23: rib Weak Regionally restricted euxassay_019458_16
TS23: upper jaw incisor Strong Regionally restricted euxassay_019458_16
TS23: lower jaw incisor Strong Regionally restricted euxassay_019458_16
TS23: maxilla Moderate Regionally restricted euxassay_019458_16
TS23: mandible Moderate Regionally restricted euxassay_019458_16
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019458_16
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_019458_16
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019458_16
TS23: clavicle Moderate Regionally restricted euxassay_019458_16
TS23: axial skeleton tail region Strong Regionally restricted euxassay_019458_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_019458_16 trigeminal motor nucleus
TS23: olfactory epithelium Strong Regionally restricted euxassay_019458_16
Specimen euxassay_019458_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019458_17
TS23: axial skeleton Weak Regionally restricted euxassay_019458_17
TS23: mandible Moderate Regionally restricted euxassay_019458_17
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_019458_17
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019458_17
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_019458_17
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_019458_17
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019458_17
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_019458_17
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019458_17
Specimen euxassay_019458_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019458_18
TS23: maxilla Strong Regionally restricted euxassay_019458_18
TS23: mandible Strong Regionally restricted euxassay_019458_18
TS23: upper jaw molar Strong Regionally restricted euxassay_019458_18
TS23: lower jaw molar Strong Regionally restricted euxassay_019458_18
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_019458_18
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019458_18
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_019458_18
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_019458_18
TS23: turbinate bone primordium Strong Regionally restricted euxassay_019458_18
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_019458_18
TS23: dorsal root ganglion Strong Regionally restricted euxassay_019458_18
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_019458_18
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019458_18
Specimen euxassay_019458_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019458_19
TS23: maxilla Moderate Regionally restricted euxassay_019458_19
TS23: mandible Moderate Regionally restricted euxassay_019458_19
TS23: vibrissa Strong Regionally restricted euxassay_019458_19
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_019458_19
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019458_19
TS23: facial ganglion Strong Regionally restricted euxassay_019458_19
TS23: turbinate bone primordium Strong Regionally restricted euxassay_019458_19
TS23: orbito-sphenoid Strong Regionally restricted euxassay_019458_19
TS23: pelvic girdle skeleton Moderate Regionally restricted euxassay_019458_19
Specimen euxassay_019458_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_019458_20
TS23: mandible Moderate Regionally restricted euxassay_019458_20
TS23: maxilla Moderate Regionally restricted euxassay_019458_20
TS23: vibrissa Strong Regionally restricted euxassay_019458_20
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_019458_20
TS23: trigeminal ganglion Strong Regionally restricted euxassay_019458_20
TS23: orbito-sphenoid Strong Regionally restricted euxassay_019458_20
TS23: turbinate bone primordium Strong Regionally restricted euxassay_019458_20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory