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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827712
Gene symbol: Rgma
Gene name: repulsive guidance molecule family member A
Probe: MGC clone 69915
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_007168_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_01
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_007168_01
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_01
Specimen euxassay_007168_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_02
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_02
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_02
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_02
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_02
TS23: foot Moderate Regionally restricted euxassay_007168_02
TS23: hand Moderate Regionally restricted euxassay_007168_02
Specimen euxassay_007168_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_03
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_03
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_03
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_03
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_03
TS23: hand Moderate Regionally restricted euxassay_007168_03
TS23: foot Moderate Regionally restricted euxassay_007168_03
Specimen euxassay_007168_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_04
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_04
TS23: pons ventricular layer Strong Uniform euxassay_007168_04
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_04
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_04
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007168_04
TS23: facial ganglion Moderate Regionally restricted euxassay_007168_04
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_04
TS23: foot Moderate Regionally restricted euxassay_007168_04
TS23: hand Moderate Regionally restricted euxassay_007168_04
Specimen euxassay_007168_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_05
TS23: pons ventricular layer Strong Uniform euxassay_007168_05
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_05
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_05
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007168_05
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007168_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_05
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_007168_05
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_05
Specimen euxassay_007168_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_06
TS23: pons ventricular layer Strong Uniform euxassay_007168_06
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_06
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_06
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007168_06
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007168_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007168_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_007168_06
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_06
Specimen euxassay_007168_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_07
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_07
TS23: pons ventricular layer Strong Uniform euxassay_007168_07
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007168_07
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_07
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007168_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007168_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007168_07
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_007168_07
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_07
Specimen euxassay_007168_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_08
TS23: pons ventricular layer Strong Uniform euxassay_007168_08
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007168_08
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_08
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007168_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_08
TS23: dorsal grey horn Strong Regionally restricted euxassay_007168_08
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_08
TS23: pancreas Weak Regionally restricted euxassay_007168_08
Specimen euxassay_007168_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_09
TS23: pons ventricular layer Strong Uniform euxassay_007168_09
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007168_09
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_09
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007168_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007168_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007168_09
TS23: dorsal grey horn Strong Regionally restricted euxassay_007168_09
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_09
TS23: pancreas Weak Regionally restricted euxassay_007168_09
Specimen euxassay_007168_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_10
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_007168_10
TS23: pons ventricular layer Strong Uniform euxassay_007168_10
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007168_10
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_10
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007168_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007168_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007168_10
TS23: dorsal grey horn Strong Regionally restricted euxassay_007168_10
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_10
TS23: pancreas Weak Regionally restricted euxassay_007168_10
Specimen euxassay_007168_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_007168_11
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_11
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_11
TS23: pons ventricular layer Strong Uniform euxassay_007168_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007168_11
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_11
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007168_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007168_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007168_11
TS23: dorsal grey horn Strong Regionally restricted euxassay_007168_11
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_11
TS23: pancreas Weak Regionally restricted euxassay_007168_11
Specimen euxassay_007168_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_12
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_12
TS23: pons ventricular layer Strong Uniform euxassay_007168_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007168_12
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_12
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007168_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007168_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007168_12
TS23: ventral grey horn Moderate Regionally restricted euxassay_007168_12
TS23: dorsal grey horn Moderate Regionally restricted euxassay_007168_12
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_12
Specimen euxassay_007168_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_13
TS23: pons ventricular layer Strong Uniform euxassay_007168_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007168_13
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007168_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007168_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007168_13
TS23: ventral grey horn Moderate Regionally restricted euxassay_007168_13
TS23: dorsal grey horn Strong Regionally restricted euxassay_007168_13
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_13
Specimen euxassay_007168_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_14
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_14
TS23: pons ventricular layer Strong Uniform euxassay_007168_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007168_14
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007168_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007168_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007168_14
TS23: dorsal grey horn Strong Regionally restricted euxassay_007168_14
TS23: ventral grey horn Moderate Regionally restricted euxassay_007168_14
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_14
Specimen euxassay_007168_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_15
TS23: pons ventricular layer Strong Uniform euxassay_007168_15
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007168_15
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007168_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007168_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007168_15
TS23: dorsal grey horn Strong Regionally restricted euxassay_007168_15
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_15
TS23: pancreas Weak Regionally restricted euxassay_007168_15
Specimen euxassay_007168_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_16
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_007168_16
TS23: pons ventricular layer Strong Uniform euxassay_007168_16
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_16
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007168_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007168_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007168_16
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_16
TS23: pancreas Weak Regionally restricted euxassay_007168_16
Specimen euxassay_007168_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_17
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_17
TS23: pons ventricular layer Strong Uniform euxassay_007168_17
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_17
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007168_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007168_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007168_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007168_17
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_007168_17
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_17
TS23: pancreas Weak Regionally restricted euxassay_007168_17
Specimen euxassay_007168_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_18
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_18
TS23: pons ventricular layer Strong Uniform euxassay_007168_18
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_18
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_18
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_007168_18
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_18
Specimen euxassay_007168_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_19
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_19
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_19
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_19
TS23: facial ganglion Moderate Regionally restricted euxassay_007168_19
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_007168_19
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_19
Specimen euxassay_007168_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_20
TS23: metencephalon rest of alar plate ventricular layer Strong Uniform euxassay_007168_20
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_007168_20
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_20
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_20
Specimen euxassay_007168_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_21
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_007168_21
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_21
TS23: foot Moderate Regionally restricted euxassay_007168_21
Specimen euxassay_007168_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_007168_22
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_22
TS23: foot Moderate Regionally restricted euxassay_007168_22
TS23: hand Moderate Regionally restricted euxassay_007168_22
Specimen euxassay_007168_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_23
TS23: hand Moderate Regionally restricted euxassay_007168_23
TS23: foot Moderate Regionally restricted euxassay_007168_23
Specimen euxassay_007168_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_007168_24
TS23: foot Moderate Regionally restricted euxassay_007168_24
TS23: hand Moderate Regionally restricted euxassay_007168_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory