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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827499
Gene symbol: Ptchd1
Gene name: patched domain containing 1
Probe: T35790
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006479_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006479_03
Specimen euxassay_006479_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006479_04
Specimen euxassay_006479_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006479_05
TS23: pons mantle layer Weak Regionally restricted euxassay_006479_05
Specimen euxassay_006479_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006479_06
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_006479_06
TS23: pons mantle layer Weak Regionally restricted euxassay_006479_06
Specimen euxassay_006479_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006479_07
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_006479_07
TS23: pons mantle layer Weak Regionally restricted euxassay_006479_07
TS23: midbrain mantle layer Weak Regionally restricted euxassay_006479_07
TS23: ventral grey horn Moderate Single cells euxassay_006479_07
Specimen euxassay_006479_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006479_08
TS23: pons mantle layer Weak Regionally restricted euxassay_006479_08
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_006479_08
TS23: midbrain mantle layer Weak Single cells euxassay_006479_08
TS23: diencephalon lateral wall mantle layer Weak Single cells euxassay_006479_08
TS23: ventral grey horn Moderate Single cells euxassay_006479_08
Specimen euxassay_006479_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006479_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_006479_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006479_09
TS23: midbrain mantle layer Weak Single cells euxassay_006479_09
TS23: diencephalon lateral wall mantle layer Weak Single cells euxassay_006479_09
TS23: ventral grey horn Moderate Single cells euxassay_006479_09
TS23: dorsal grey horn Moderate Single cells euxassay_006479_09
TS23: olfactory epithelium Weak Regionally restricted euxassay_006479_09
Specimen euxassay_006479_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006479_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_006479_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006479_10
TS23: midbrain mantle layer Moderate Single cells euxassay_006479_10
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_006479_10
TS23: ventral grey horn Moderate Single cells euxassay_006479_10
TS23: olfactory epithelium Weak Regionally restricted euxassay_006479_10
Specimen euxassay_006479_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_006479_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006479_11
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_006479_11
TS23: midbrain mantle layer Moderate Single cells euxassay_006479_11
TS23: ventral grey horn Moderate Single cells euxassay_006479_11
TS23: olfactory epithelium Weak Regionally restricted euxassay_006479_11
Specimen euxassay_006479_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006479_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_006479_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006479_12
TS23: midbrain mantle layer Moderate Single cells euxassay_006479_12
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_006479_12
TS23: ventral grey horn Moderate Single cells euxassay_006479_12
Specimen euxassay_006479_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006479_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_006479_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006479_13
TS23: midbrain mantle layer Moderate Single cells euxassay_006479_13
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_006479_13
Specimen euxassay_006479_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006479_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_006479_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006479_14
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_006479_14
TS23: midbrain mantle layer Moderate Single cells euxassay_006479_14
TS23: olfactory epithelium Weak Regionally restricted euxassay_006479_14
Specimen euxassay_006479_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006479_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_006479_15
TS23: diencephalon lateral wall mantle layer Weak Single cells euxassay_006479_15
TS23: midbrain mantle layer Weak Single cells euxassay_006479_15
TS23: olfactory epithelium Weak Regionally restricted euxassay_006479_15
Specimen euxassay_006479_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006479_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_006479_16
TS23: olfactory epithelium Weak Regionally restricted euxassay_006479_16
Specimen euxassay_006479_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006479_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_006479_17
Specimen euxassay_006479_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006479_18
Specimen euxassay_006479_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006479_19
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory