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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827359
Gene symbol: Ppil1
Gene name: peptidylprolyl isomerase (cyclophilin)-like 1
Probe: MGC clone 66761
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_005130_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_005130_01
TS23: lung Strong Regionally restricted euxassay_005130_01
TS23: liver Strong Regionally restricted euxassay_005130_01
TS23: retina Moderate Regionally restricted euxassay_005130_01
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_005130_01
TS23: stomach Moderate Regionally restricted euxassay_005130_01
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_01
TS23: brain Weak Regionally restricted euxassay_005130_01
Specimen euxassay_005130_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_02
TS23: lung Strong Regionally restricted euxassay_005130_02
TS23: liver Strong Regionally restricted euxassay_005130_02
TS23: retina Moderate Regionally restricted euxassay_005130_02
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_005130_02
TS23: stomach Moderate Regionally restricted euxassay_005130_02
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_02
TS23: brain Weak Regionally restricted euxassay_005130_02
Specimen euxassay_005130_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_03
TS23: liver Strong Regionally restricted euxassay_005130_03
TS23: lung Strong Regionally restricted euxassay_005130_03
TS23: metanephros Strong Regionally restricted euxassay_005130_03
TS23: retina Moderate Regionally restricted euxassay_005130_03
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_005130_03
TS23: stomach Moderate Regionally restricted euxassay_005130_03
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005130_03
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_03
TS23: brain Weak Regionally restricted euxassay_005130_03
Specimen euxassay_005130_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_04
TS23: metanephros Strong Regionally restricted euxassay_005130_04
TS23: liver Strong Regionally restricted euxassay_005130_04
TS23: lung Strong Regionally restricted euxassay_005130_04
TS23: retina Moderate Regionally restricted euxassay_005130_04
TS23: stomach Moderate Regionally restricted euxassay_005130_04
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005130_04
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_04
TS23: brain Moderate Regionally restricted euxassay_005130_04
TS23: naso-lacrimal duct Weak Regionally restricted euxassay_005130_04
Specimen euxassay_005130_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_05
TS23: liver Strong Regionally restricted euxassay_005130_05
TS23: metanephros Strong Regionally restricted euxassay_005130_05
TS23: lung Strong Regionally restricted euxassay_005130_05
TS23: vibrissa Moderate Regionally restricted euxassay_005130_05
TS23: stomach Moderate Regionally restricted euxassay_005130_05
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005130_05
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_05
TS23: brain Moderate Regionally restricted euxassay_005130_05
TS23: naso-lacrimal duct Weak Regionally restricted euxassay_005130_05
Specimen euxassay_005130_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_06
TS23: lung Strong Regionally restricted euxassay_005130_06
TS23: metanephros Strong Regionally restricted euxassay_005130_06
TS23: hepatic duct Strong Regionally restricted euxassay_005130_06
TS23: vibrissa Weak Regionally restricted euxassay_005130_06
TS23: submandibular gland primordium Strong Regionally restricted euxassay_005130_06
TS23: stomach Moderate Regionally restricted euxassay_005130_06
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005130_06
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_06
TS23: brain Moderate Regionally restricted euxassay_005130_06
TS23: naso-lacrimal duct Weak Regionally restricted euxassay_005130_06
Specimen euxassay_005130_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_07
TS23: liver Strong Regionally restricted euxassay_005130_07
TS23: lung Strong Regionally restricted euxassay_005130_07
TS23: metanephros Strong Regionally restricted euxassay_005130_07
TS23: vibrissa Strong Regionally restricted euxassay_005130_07
TS23: upper jaw molar Moderate Regionally restricted euxassay_005130_07
TS23: lower jaw molar Moderate Regionally restricted euxassay_005130_07
TS23: submandibular gland primordium Strong Regionally restricted euxassay_005130_07
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005130_07
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_07
TS23: brain Moderate Regionally restricted euxassay_005130_07
TS23: spinal cord Moderate Regionally restricted euxassay_005130_07
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_005130_07
Specimen euxassay_005130_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_08
TS23: liver Strong Regionally restricted euxassay_005130_08
TS23: lung Strong Regionally restricted euxassay_005130_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005130_08
TS23: vibrissa Strong Regionally restricted euxassay_005130_08
TS23: upper jaw molar Moderate Regionally restricted euxassay_005130_08
TS23: lower jaw molar Moderate Regionally restricted euxassay_005130_08
TS23: submandibular gland primordium Strong Regionally restricted euxassay_005130_08
TS23: thymus primordium Strong Regionally restricted euxassay_005130_08
TS23: thyroid gland Strong Regionally restricted euxassay_005130_08
TS23: midgut Strong Regionally restricted euxassay_005130_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005130_08
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_08
TS23: brain Moderate Regionally restricted euxassay_005130_08
TS23: spinal cord Moderate Regionally restricted euxassay_005130_08
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_005130_08
Specimen euxassay_005130_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_09
TS23: liver Strong Regionally restricted euxassay_005130_09
TS23: lung Strong Regionally restricted euxassay_005130_09
TS23: olfactory epithelium Strong Regionally restricted euxassay_005130_09
TS23: vibrissa Strong Regionally restricted euxassay_005130_09
TS23: thymus primordium Strong Regionally restricted euxassay_005130_09
TS23: thyroid gland Strong Regionally restricted euxassay_005130_09
TS23: midgut Strong Regionally restricted euxassay_005130_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005130_09
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_09
TS23: brain Moderate Regionally restricted euxassay_005130_09
TS23: spinal cord Moderate Regionally restricted euxassay_005130_09
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_005130_09
TS23: tail Weak Regionally restricted euxassay_005130_09
Specimen euxassay_005130_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_10
TS23: liver Strong Regionally restricted euxassay_005130_10
TS23: lung Strong Regionally restricted euxassay_005130_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005130_10
TS23: midgut Strong Regionally restricted euxassay_005130_10
TS23: rectum Strong Regionally restricted euxassay_005130_10
TS23: trachea Moderate Regionally restricted euxassay_005130_10
TS23: tongue Weak Regionally restricted euxassay_005130_10
TS23: bladder Moderate Regionally restricted euxassay_005130_10
TS23: urethra Moderate Regionally restricted euxassay_005130_10 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005130_10
TS23: brain Moderate Regionally restricted euxassay_005130_10
TS23: spinal cord Moderate Regionally restricted euxassay_005130_10
TS23: tail Weak Regionally restricted euxassay_005130_10
Specimen euxassay_005130_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_11
TS23: liver Strong Regionally restricted euxassay_005130_11
TS23: lung Strong Regionally restricted euxassay_005130_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005130_11
TS23: lower jaw incisor Moderate Regionally restricted euxassay_005130_11
TS23: thymus primordium Strong Regionally restricted euxassay_005130_11
TS23: midgut Strong Regionally restricted euxassay_005130_11
TS23: trachea Moderate Regionally restricted euxassay_005130_11
TS23: tongue Weak Regionally restricted euxassay_005130_11
TS23: bladder Moderate Regionally restricted euxassay_005130_11
TS23: urethra Moderate Regionally restricted euxassay_005130_11 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005130_11
TS23: brain Moderate Regionally restricted euxassay_005130_11
TS23: spinal cord Moderate Regionally restricted euxassay_005130_11
TS23: tail Weak Regionally restricted euxassay_005130_11
Specimen euxassay_005130_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_12
TS23: liver Strong Regionally restricted euxassay_005130_12
TS23: lung Strong Regionally restricted euxassay_005130_12
TS23: metanephros Strong Regionally restricted euxassay_005130_12
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005130_12
TS23: lower jaw incisor Moderate Regionally restricted euxassay_005130_12
TS23: upper jaw incisor Moderate Regionally restricted euxassay_005130_12
TS23: thymus primordium Strong Regionally restricted euxassay_005130_12
TS23: thyroid gland Strong Regionally restricted euxassay_005130_12
TS23: midgut Strong Regionally restricted euxassay_005130_12
TS23: tongue Weak Regionally restricted euxassay_005130_12
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_005130_12
TS23: brain Moderate Regionally restricted euxassay_005130_12
TS23: spinal cord Moderate Regionally restricted euxassay_005130_12
TS23: tail Weak Regionally restricted euxassay_005130_12
Specimen euxassay_005130_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_005130_13
TS23: lung Strong Regionally restricted euxassay_005130_13
TS23: metanephros Strong Regionally restricted euxassay_005130_13
TS23: liver Strong Regionally restricted euxassay_005130_13
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_005130_13
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005130_13
TS23: lower jaw incisor Moderate Regionally restricted euxassay_005130_13
TS23: upper jaw incisor Moderate Regionally restricted euxassay_005130_13
TS23: midgut Strong Regionally restricted euxassay_005130_13
TS23: tongue Moderate Regionally restricted euxassay_005130_13
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_13
TS23: brain Moderate Regionally restricted euxassay_005130_13
TS23: spinal cord Moderate Regionally restricted euxassay_005130_13
TS23: tail Moderate Regionally restricted euxassay_005130_13
Specimen euxassay_005130_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_005130_14
TS23: liver Strong Regionally restricted euxassay_005130_14
TS23: metanephros Strong Regionally restricted euxassay_005130_14
TS23: lung Strong Regionally restricted euxassay_005130_14
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_005130_14
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005130_14
TS23: midgut Strong Regionally restricted euxassay_005130_14
TS23: tongue Weak Regionally restricted euxassay_005130_14
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_14
TS23: brain Moderate Regionally restricted euxassay_005130_14
TS23: tail Moderate Regionally restricted euxassay_005130_14
Specimen euxassay_005130_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_005130_15
TS23: liver Strong Regionally restricted euxassay_005130_15
TS23: larynx Strong Regionally restricted euxassay_005130_15
TS23: metanephros Strong Regionally restricted euxassay_005130_15
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005130_15
TS23: lower jaw incisor Moderate Regionally restricted euxassay_005130_15
TS23: submandibular gland primordium Strong Regionally restricted euxassay_005130_15
TS23: midgut Strong Regionally restricted euxassay_005130_15
TS23: tongue Weak Regionally restricted euxassay_005130_15
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_15
TS23: brain Moderate Regionally restricted euxassay_005130_15
TS23: tail Moderate Regionally restricted euxassay_005130_15
Specimen euxassay_005130_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_16
TS23: liver Strong Regionally restricted euxassay_005130_16
TS23: lung Strong Regionally restricted euxassay_005130_16
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005130_16
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_005130_16
TS23: lower jaw incisor Moderate Regionally restricted euxassay_005130_16
TS23: upper jaw incisor Moderate Regionally restricted euxassay_005130_16
TS23: submandibular gland primordium Strong Regionally restricted euxassay_005130_16
TS23: midgut Strong Regionally restricted euxassay_005130_16
TS23: tongue Weak Regionally restricted euxassay_005130_16
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_16
TS23: brain Moderate Regionally restricted euxassay_005130_16
TS23: tail Moderate Regionally restricted euxassay_005130_16
Specimen euxassay_005130_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_17
TS23: liver Strong Regionally restricted euxassay_005130_17
TS23: lung Strong Regionally restricted euxassay_005130_17
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005130_17
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_005130_17
TS23: lower jaw molar Moderate Regionally restricted euxassay_005130_17
TS23: upper jaw molar Moderate Regionally restricted euxassay_005130_17
TS23: submandibular gland primordium Strong Regionally restricted euxassay_005130_17
TS23: midgut Strong Regionally restricted euxassay_005130_17
TS23: tongue Moderate Regionally restricted euxassay_005130_17
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_17
TS23: brain Moderate Regionally restricted euxassay_005130_17
Specimen euxassay_005130_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_18
TS23: liver Strong Regionally restricted euxassay_005130_18
TS23: lung Strong Regionally restricted euxassay_005130_18
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005130_18
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_005130_18
TS23: lower jaw molar Moderate Regionally restricted euxassay_005130_18
TS23: upper jaw molar Moderate Regionally restricted euxassay_005130_18
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_18
TS23: brain Moderate Regionally restricted euxassay_005130_18
Specimen euxassay_005130_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_19
TS23: liver Strong Regionally restricted euxassay_005130_19
TS23: lung Strong Regionally restricted euxassay_005130_19
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005130_19
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_005130_19
TS23: upper jaw molar Moderate Regionally restricted euxassay_005130_19
TS23: lower jaw molar Moderate Regionally restricted euxassay_005130_19
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_19
TS23: brain Moderate Regionally restricted euxassay_005130_19
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_005130_19
Specimen euxassay_005130_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_20
TS23: liver Strong Regionally restricted euxassay_005130_20
TS23: lung Strong Regionally restricted euxassay_005130_20
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_005130_20
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_005130_20
TS23: brain Moderate Regionally restricted euxassay_005130_20
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_005130_20
Specimen euxassay_005130_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_21
TS23: liver Strong Regionally restricted euxassay_005130_21
TS23: vibrissa Strong Regionally restricted euxassay_005130_21
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_005130_21
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_005130_21
TS23: brain Moderate Regionally restricted euxassay_005130_21
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_005130_21
Specimen euxassay_005130_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_005130_22
TS23: liver Strong Regionally restricted euxassay_005130_22
TS23: retina Moderate Regionally restricted euxassay_005130_22
TS23: vibrissa Strong Regionally restricted euxassay_005130_22
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_005130_22
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_005130_22
TS23: brain Moderate Regionally restricted euxassay_005130_22
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_005130_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory