About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827088
Gene symbol: Pcdhb9
Gene name: protocadherin beta 9
Probe: MGC clone 66841
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006303_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_01
Specimen euxassay_006303_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_02
TS23: neural retina Weak Regionally restricted euxassay_006303_02
Specimen euxassay_006303_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_03
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_03
TS23: neural retina Moderate Regionally restricted euxassay_006303_03
Specimen euxassay_006303_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_04
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_04
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_04
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_04
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_04
TS23: neural retina Moderate Regionally restricted euxassay_006303_04
Specimen euxassay_006303_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_05
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_05
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_05
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_05
TS23: neural retina Moderate Regionally restricted euxassay_006303_05
Specimen euxassay_006303_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_06
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_06
TS23: glossopharyngeal ganglion Moderate Uniform euxassay_006303_06
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_06
Specimen euxassay_006303_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_07
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_07
TS23: vagus ganglion Moderate Uniform euxassay_006303_07
TS23: vestibulo-cochlear ganglion Moderate Uniform euxassay_006303_07
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_07
TS23: cervical ganglion Moderate Regionally restricted euxassay_006303_07
Specimen euxassay_006303_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_08
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_08
TS23: cervical ganglion Weak Regionally restricted euxassay_006303_08
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_006303_08
Specimen euxassay_006303_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_09
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_09
TS23: dorsal root ganglion Weak Regionally restricted euxassay_006303_09
Specimen euxassay_006303_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_10
TS23: trigeminal nerve Moderate Uniform euxassay_006303_10
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_10
TS23: dorsal root ganglion Weak Regionally restricted euxassay_006303_10
Specimen euxassay_006303_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_11
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_11
TS23: trigeminal nerve Moderate Uniform euxassay_006303_11
TS23: dorsal root ganglion Weak Regionally restricted euxassay_006303_11
Specimen euxassay_006303_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_12
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_12
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_12
Specimen euxassay_006303_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_13
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_13
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_13
Specimen euxassay_006303_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_14
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_14
Specimen euxassay_006303_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_15
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_15
Specimen euxassay_006303_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_16
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_006303_16
Specimen euxassay_006303_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_17
TS23: dorsal root ganglion Weak Regionally restricted euxassay_006303_17
TS23: cervical ganglion Weak Regionally restricted euxassay_006303_17
Specimen euxassay_006303_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_18
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_006303_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_18
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_18
TS23: trigeminal nerve Moderate Uniform euxassay_006303_18
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_18
TS23: vagus ganglion Moderate Uniform euxassay_006303_18
TS23: glossopharyngeal ganglion Moderate Uniform euxassay_006303_18
Specimen euxassay_006303_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_19
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_19
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_19
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_19
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_19
Specimen euxassay_006303_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_20
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_20
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_20
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_20
Specimen euxassay_006303_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006303_21
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006303_21
TS23: trigeminal ganglion Strong Uniform euxassay_006303_21
Specimen euxassay_006303_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006303_22
TS23: trigeminal ganglion Strong Uniform euxassay_006303_22
Specimen euxassay_006303_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_23
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_23
Specimen euxassay_006303_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory