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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827064
Gene symbol: Pax5
Gene name: paired box 5
Probe: T35512
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_008993_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008993_06
TS23: metencephalon rest of alar plate mantle layer Strong Regionally restricted euxassay_008993_06
Specimen euxassay_008993_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon rest of alar plate mantle layer Strong Regionally restricted euxassay_008993_07
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008993_07
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_008993_07
Specimen euxassay_008993_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon rest of alar plate mantle layer Strong Regionally restricted euxassay_008993_08
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008993_08
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_008993_08
Specimen euxassay_008993_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon rest of alar plate mantle layer Strong Regionally restricted euxassay_008993_09
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_008993_09
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008993_09
Specimen euxassay_008993_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_008993_10
TS23: metencephalon rest of alar plate mantle layer Strong Regionally restricted euxassay_008993_10
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008993_10
TS23: pons mantle layer Strong Regionally restricted euxassay_008993_10
Specimen euxassay_008993_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_008993_11
TS23: metencephalon rest of alar plate mantle layer Strong Regionally restricted euxassay_008993_11
TS23: pons mantle layer Strong Regionally restricted euxassay_008993_11
Specimen euxassay_008993_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_008993_12
Specimen euxassay_008993_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: metencephalon rest of alar plate mantle layer Weak Regionally restricted euxassay_008993_13
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_008993_13
TS23: pons mantle layer Weak Regionally restricted euxassay_008993_13
Specimen euxassay_008993_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_008993_14
TS23: metencephalon rest of alar plate mantle layer Strong Regionally restricted euxassay_008993_14
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_008993_14
Specimen euxassay_008993_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_008993_15
TS23: metencephalon rest of alar plate mantle layer Strong Regionally restricted euxassay_008993_15
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_008993_15
Specimen euxassay_008993_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_008993_16
TS23: metencephalon rest of alar plate mantle layer Strong Regionally restricted euxassay_008993_16
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_008993_16
Specimen euxassay_008993_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_008993_17
TS23: metencephalon rest of alar plate mantle layer Strong Regionally restricted euxassay_008993_17
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_008993_17
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008993_17
Specimen euxassay_008993_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Strong Regionally restricted euxassay_008993_18
TS23: metencephalon rest of alar plate mantle layer Strong Regionally restricted euxassay_008993_18
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_008993_18
TS23: midbrain mantle layer Strong Regionally restricted euxassay_008993_18
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory