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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827061
Gene symbol: Pax1
Gene name: paired box 1
Probe: T35510
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_008970_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_008970_01
Specimen euxassay_008970_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Strong Regionally restricted euxassay_008970_02
Specimen euxassay_008970_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Strong Regionally restricted euxassay_008970_03
Specimen euxassay_008970_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_04
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_008970_04
TS23: head mesenchyme Strong Regionally restricted euxassay_008970_04
Specimen euxassay_008970_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_05
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_008970_05
TS23: head mesenchyme Strong Regionally restricted euxassay_008970_05
Specimen euxassay_008970_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_06
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_008970_06
TS23: head mesenchyme Strong Regionally restricted euxassay_008970_06
Specimen euxassay_008970_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_07
TS23: axial skeleton Moderate Regionally restricted euxassay_008970_07
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_008970_07
TS23: head mesenchyme Moderate Regionally restricted euxassay_008970_07
Specimen euxassay_008970_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_08
TS23: axial skeleton Moderate Regionally restricted euxassay_008970_08
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_008970_08
TS23: head mesenchyme Moderate Regionally restricted euxassay_008970_08
Specimen euxassay_008970_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_09
TS23: axial skeleton Strong Regionally restricted euxassay_008970_09
TS23: head mesenchyme Moderate Regionally restricted euxassay_008970_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008970_09
Specimen euxassay_008970_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_10
TS23: axial skeleton Strong Regionally restricted euxassay_008970_10
TS23: thymus primordium Strong Regionally restricted euxassay_008970_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008970_10
TS23: pharynx epithelium Moderate Regionally restricted euxassay_008970_10
Specimen euxassay_008970_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_11
TS23: axial skeleton Strong Regionally restricted euxassay_008970_11
TS23: thymus primordium Strong Regionally restricted euxassay_008970_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008970_11
TS23: pharynx epithelium Moderate Regionally restricted euxassay_008970_11
Specimen euxassay_008970_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_12
TS23: axial skeleton Strong Regionally restricted euxassay_008970_12
TS23: sternum Moderate Regionally restricted euxassay_008970_12
TS23: thymus primordium Strong Regionally restricted euxassay_008970_12
TS23: head mesenchyme Moderate Regionally restricted euxassay_008970_12
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008970_12
Specimen euxassay_008970_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_13
TS23: axial skeleton Strong Regionally restricted euxassay_008970_13
TS23: sternum Strong Regionally restricted euxassay_008970_13
TS23: thymus primordium Strong Regionally restricted euxassay_008970_13
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008970_13
TS23: pharynx epithelium Moderate Regionally restricted euxassay_008970_13
Specimen euxassay_008970_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_14
TS23: axial skeleton Strong Regionally restricted euxassay_008970_14
TS23: sternum Strong Regionally restricted euxassay_008970_14
TS23: thymus primordium Strong Regionally restricted euxassay_008970_14
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008970_14
TS23: pharynx epithelium Moderate Regionally restricted euxassay_008970_14
Specimen euxassay_008970_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_15
TS23: axial skeleton Strong Regionally restricted euxassay_008970_15
TS23: sternum Strong Regionally restricted euxassay_008970_15
TS23: thymus primordium Strong Regionally restricted euxassay_008970_15
TS23: pharynx epithelium Moderate Regionally restricted euxassay_008970_15
Specimen euxassay_008970_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_16
TS23: axial skeleton Strong Regionally restricted euxassay_008970_16
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_008970_16
TS23: pharynx epithelium Moderate Regionally restricted euxassay_008970_16
Specimen euxassay_008970_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_17
TS23: axial skeleton Strong Regionally restricted euxassay_008970_17
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_008970_17
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008970_17
Specimen euxassay_008970_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton tail region Strong Regionally restricted euxassay_008970_18
TS23: axial skeleton Strong Regionally restricted euxassay_008970_18
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_008970_18
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008970_18
Specimen euxassay_008970_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Strong Regionally restricted euxassay_008970_19
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_008970_19
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008970_19
Specimen euxassay_008970_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_008970_20
TS23: head mesenchyme Strong Regionally restricted euxassay_008970_20
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008970_20
Specimen euxassay_008970_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_008970_21
TS23: head mesenchyme Moderate Regionally restricted euxassay_008970_21
TS23: olfactory epithelium Moderate Regionally restricted euxassay_008970_21
Specimen euxassay_008970_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_008970_22
TS23: head mesenchyme Moderate Regionally restricted euxassay_008970_22
Specimen euxassay_008970_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_008970_23
TS23: head mesenchyme Moderate Regionally restricted euxassay_008970_23
Specimen euxassay_008970_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_008970_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory