Otx2 RNA in situ Gene Expression Assay

Gene Expression Data
Assay Details

Assay

Reference:	J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type:	RNA in situ
MGI Accession ID:	MGI:4827007
Gene symbol:	Otx2
Gene name:	orthodenticle homeobox 2

Probe:	MGC clone 27657
Probe preparation:	Antisense labelled with digoxigenin RNA
Visualized with:	Alkaline phosphatase
Assay notes:	Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.

Results

euxassay_003086_01 ©

Specimen euxassay_003086_01: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: neural retina	Strong	Regionally restricted	euxassay_003086_01

euxassay_003086_02 ©

Specimen euxassay_003086_02: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: neural retina	Strong	Regionally restricted	euxassay_003086_02

euxassay_003086_03 ©

Specimen euxassay_003086_03: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_03
TS23: neural retina	Strong	Regionally restricted	euxassay_003086_03

euxassay_003086_04 ©

Specimen euxassay_003086_04: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_04
TS23: cochlea	Strong	Regionally restricted	euxassay_003086_04

euxassay_003086_05 ©

Specimen euxassay_003086_05: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_05
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_05
TS23: cochlea	Strong	Regionally restricted	euxassay_003086_05

euxassay_003086_06 ©

Specimen euxassay_003086_06: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_06
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_06
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_06
TS23: cochlea	Strong	Regionally restricted	euxassay_003086_06

euxassay_003086_07 ©

Specimen euxassay_003086_07: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_07
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_07
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_07
TS23: midbrain marginal layer	Strong	Regionally restricted	euxassay_003086_07
TS23: telencephalon ventricular layer	Moderate	Regionally restricted	euxassay_003086_07
TS23: cochlea	Strong	Regionally restricted	euxassay_003086_07
TS23: olfactory epithelium	Strong	Regionally restricted	euxassay_003086_07

euxassay_003086_08 ©

Specimen euxassay_003086_08: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_08
TS23: telencephalon ventricular layer	Moderate	Regionally restricted	euxassay_003086_08
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_08
TS23: midbrain marginal layer	Strong	Regionally restricted	euxassay_003086_08
TS23: cochlea	Strong	Regionally restricted	euxassay_003086_08
TS23: olfactory epithelium	Strong	Regionally restricted	euxassay_003086_08

euxassay_003086_09 ©

Specimen euxassay_003086_09: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_09
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_09
TS23: midbrain ventricular layer	Strong	Regionally restricted	euxassay_003086_09
TS23: midbrain marginal layer	Strong	Regionally restricted	euxassay_003086_09
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_09
TS23: telencephalon ventricular layer	Strong	Regionally restricted	euxassay_003086_09
TS23: olfactory cortex ventricular layer	Strong	Regionally restricted	euxassay_003086_09
TS23: diencephalon lateral wall ventricular layer	Strong	Regionally restricted	euxassay_003086_09
TS23: cochlea	Strong	Regionally restricted	euxassay_003086_09
TS23: naris	Strong	Regionally restricted	euxassay_003086_09
TS23: olfactory epithelium	Strong	Regionally restricted	euxassay_003086_09

euxassay_003086_10 ©

Specimen euxassay_003086_10: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_10
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_10
TS23: midbrain ventricular layer	Strong	Regionally restricted	euxassay_003086_10
TS23: midbrain marginal layer	Strong	Regionally restricted	euxassay_003086_10
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_10
TS23: telencephalon ventricular layer	Strong	Regionally restricted	euxassay_003086_10
TS23: olfactory cortex ventricular layer	Strong	Regionally restricted	euxassay_003086_10
TS23: diencephalon lateral wall ventricular layer	Strong	Regionally restricted	euxassay_003086_10
TS23: hypothalamus ventricular layer	Strong	Regionally restricted	euxassay_003086_10
TS23: telencephalon mantle layer	Strong	Regionally restricted	euxassay_003086_10
TS23: naris	Strong	Regionally restricted	euxassay_003086_10
TS23: olfactory epithelium	Strong	Regionally restricted	euxassay_003086_10

euxassay_003086_11 ©

Specimen euxassay_003086_11: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_11
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_11
TS23: midbrain ventricular layer	Strong	Regionally restricted	euxassay_003086_11
TS23: midbrain marginal layer	Strong	Regionally restricted	euxassay_003086_11
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_11
TS23: telencephalon ventricular layer	Strong	Regionally restricted	euxassay_003086_11
TS23: hypothalamus ventricular layer	Strong	Regionally restricted	euxassay_003086_11
TS23: diencephalon lateral wall ventricular layer	Strong	Regionally restricted	euxassay_003086_11
TS23: telencephalon mantle layer	Strong	Regionally restricted	euxassay_003086_11
TS23: naris	Strong	Regionally restricted	euxassay_003086_11
TS23: olfactory epithelium	Strong	Regionally restricted	euxassay_003086_11

euxassay_003086_12 ©

Specimen euxassay_003086_12: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_12
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_12
TS23: midbrain ventricular layer	Strong	Regionally restricted	euxassay_003086_12
TS23: midbrain marginal layer	Strong	Regionally restricted	euxassay_003086_12
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_12
TS23: hypothalamus ventricular layer	Strong	Regionally restricted	euxassay_003086_12
TS23: diencephalon lateral wall ventricular layer	Strong	Regionally restricted	euxassay_003086_12
TS23: telencephalon ventricular layer	Strong	Regionally restricted	euxassay_003086_12
TS23: telencephalon mantle layer	Strong	Regionally restricted	euxassay_003086_12

euxassay_003086_13 ©

Specimen euxassay_003086_13: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_13
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_13
TS23: midbrain ventricular layer	Strong	Regionally restricted	euxassay_003086_13
TS23: midbrain marginal layer	Strong	Regionally restricted	euxassay_003086_13
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_13
TS23: telencephalon mantle layer	Strong	Regionally restricted	euxassay_003086_13
TS23: telencephalon ventricular layer	Strong	Regionally restricted	euxassay_003086_13
TS23: diencephalon lateral wall ventricular layer	Strong	Regionally restricted	euxassay_003086_13
TS23: hypothalamus ventricular layer	Strong	Regionally restricted	euxassay_003086_13
TS23: olfactory epithelium	Strong	Regionally restricted	euxassay_003086_13
TS23: naris	Strong	Regionally restricted	euxassay_003086_13

euxassay_003086_14 ©

Specimen euxassay_003086_14: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_14
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_14
TS23: midbrain ventricular layer	Strong	Regionally restricted	euxassay_003086_14
TS23: midbrain marginal layer	Strong	Regionally restricted	euxassay_003086_14
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_14
TS23: olfactory cortex ventricular layer	Strong	Regionally restricted	euxassay_003086_14
TS23: telencephalon ventricular layer	Strong	Regionally restricted	euxassay_003086_14
TS23: diencephalon lateral wall ventricular layer	Strong	Regionally restricted	euxassay_003086_14
TS23: hypothalamus ventricular layer	Strong	Regionally restricted	euxassay_003086_14
TS23: olfactory epithelium	Strong	Regionally restricted	euxassay_003086_14
TS23: naris	Strong	Regionally restricted	euxassay_003086_14

euxassay_003086_15 ©

Specimen euxassay_003086_15: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_15
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_15
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_15
TS23: midbrain marginal layer	Strong	Regionally restricted	euxassay_003086_15
TS23: midbrain ventricular layer	Strong	Regionally restricted	euxassay_003086_15
TS23: olfactory cortex ventricular layer	Strong	Regionally restricted	euxassay_003086_15
TS23: telencephalon ventricular layer	Strong	Regionally restricted	euxassay_003086_15
TS23: diencephalon lateral wall ventricular layer	Strong	Regionally restricted	euxassay_003086_15
TS23: olfactory epithelium	Strong	Regionally restricted	euxassay_003086_15

euxassay_003086_16 ©

Specimen euxassay_003086_16: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_16
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_16
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_16
TS23: midbrain marginal layer	Strong	Regionally restricted	euxassay_003086_16
TS23: midbrain ventricular layer	Strong	Regionally restricted	euxassay_003086_16
TS23: telencephalon ventricular layer	Moderate	Regionally restricted	euxassay_003086_16
TS23: cochlea	Strong	Regionally restricted	euxassay_003086_16
TS23: olfactory epithelium	Strong	Regionally restricted	euxassay_003086_16

euxassay_003086_17 ©

Specimen euxassay_003086_17: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_17
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_17
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_17
TS23: midbrain marginal layer	Strong	Regionally restricted	euxassay_003086_17
TS23: midbrain ventricular layer	Strong	Regionally restricted	euxassay_003086_17
TS23: telencephalon ventricular layer	Moderate	Regionally restricted	euxassay_003086_17
TS23: cochlea	Strong	Regionally restricted	euxassay_003086_17
TS23: olfactory epithelium	Strong	Regionally restricted	euxassay_003086_17

Specimen euxassay_003086_18: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_18
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_18
TS23: midbrain ventricular layer	Strong	Regionally restricted	euxassay_003086_18
TS23: midbrain marginal layer	Strong	Regionally restricted	euxassay_003086_18
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_18
TS23: cochlea	Strong	Regionally restricted	euxassay_003086_18
TS23: olfactory epithelium	Strong	Regionally restricted	euxassay_003086_18

Specimen euxassay_003086_19: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: lateral ventricle choroid plexus	Strong	Uniform	euxassay_003086_19
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_19
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_19
TS23: cochlea	Strong	Regionally restricted	euxassay_003086_19

Specimen euxassay_003086_20: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_20
TS23: midbrain mantle layer	Strong	Regionally restricted	euxassay_003086_20
TS23: cochlea	Strong	Regionally restricted	euxassay_003086_20

Specimen euxassay_003086_21: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_21
TS23: cochlea	Strong	Regionally restricted	euxassay_003086_21

Specimen euxassay_003086_22: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_22
TS23: neural retina	Strong	Regionally restricted	euxassay_003086_22

Specimen euxassay_003086_23: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: 4th ventricle lateral recess	Strong	Uniform	euxassay_003086_23
TS23: neural retina	Strong	Regionally restricted	euxassay_003086_23

Specimen euxassay_003086_24: embryonic day 14.5 (more

)

Structure	Level	Pattern	Image	Note
TS23: neural retina	Strong	Regionally restricted	euxassay_003086_24

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 03/25/2025 MGI 6.24