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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4826972
Gene symbol: Onecut1
Gene name: one cut domain, family member 1
Probe: MGC clone 36136
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_003197_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_003197_01
Specimen euxassay_003197_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_003197_02
Specimen euxassay_003197_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003197_03
TS23: neural retina Strong Regionally restricted euxassay_003197_03
Specimen euxassay_003197_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003197_04
TS23: facial ganglion Strong Regionally restricted euxassay_003197_04
TS23: neural retina Strong Regionally restricted euxassay_003197_04
Specimen euxassay_003197_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003197_05
TS23: facial ganglion Strong Regionally restricted euxassay_003197_05
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_003197_05
Specimen euxassay_003197_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003197_06
TS23: facial ganglion Strong Regionally restricted euxassay_003197_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_003197_06
TS23: midbrain mantle layer Strong Regionally restricted euxassay_003197_06
TS23: pons mantle layer Strong Regionally restricted euxassay_003197_06
Specimen euxassay_003197_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003197_07
TS23: facial ganglion Moderate Regionally restricted euxassay_003197_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_003197_07
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_003197_07
TS23: midbrain mantle layer Strong Regionally restricted euxassay_003197_07
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_003197_07
TS23: pons mantle layer Strong Regionally restricted euxassay_003197_07
Specimen euxassay_003197_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_003197_08
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003197_08
TS23: pancreas Strong Regionally restricted euxassay_003197_08
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003197_08
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_003197_08
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_003197_08
TS23: midbrain mantle layer Strong Regionally restricted euxassay_003197_08
TS23: pons mantle layer Strong Regionally restricted euxassay_003197_08
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_003197_08
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_003197_08
Specimen euxassay_003197_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003197_09
TS23: pancreas Strong Regionally restricted euxassay_003197_09
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003197_09
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_003197_09
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_003197_09
TS23: midbrain mantle layer Strong Regionally restricted euxassay_003197_09
TS23: midbrain marginal layer Strong Regionally restricted euxassay_003197_09
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_003197_09
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_003197_09
TS23: pons mantle layer Strong Regionally restricted euxassay_003197_09
Specimen euxassay_003197_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003197_10
TS23: pancreas Strong Regionally restricted euxassay_003197_10
TS23: ventral grey horn Moderate Regionally restricted euxassay_003197_10
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003197_10
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_003197_10
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_003197_10
TS23: midbrain mantle layer Strong Regionally restricted euxassay_003197_10
TS23: midbrain marginal layer Strong Regionally restricted euxassay_003197_10
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_003197_10
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_003197_10
TS23: pons mantle layer Strong Regionally restricted euxassay_003197_10
Specimen euxassay_003197_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003197_11
TS23: pancreas Strong Regionally restricted euxassay_003197_11
TS23: ventral grey horn Moderate Regionally restricted euxassay_003197_11
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003197_11
TS23: telencephalon septum Present euxassay_003197_11
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_003197_11
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_003197_11
TS23: diencephalon lateral wall marginal layer Strong Regionally restricted euxassay_003197_11
TS23: midbrain marginal layer Strong Regionally restricted euxassay_003197_11
TS23: midbrain mantle layer Strong Regionally restricted euxassay_003197_11
TS23: pons ventricular layer Strong Regionally restricted euxassay_003197_11
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_003197_11
Specimen euxassay_003197_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: ventral grey horn Moderate Regionally restricted euxassay_003197_12
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003197_12
TS23: telencephalon septum Present euxassay_003197_12
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_003197_12
TS23: diencephalon lateral wall marginal layer Strong Regionally restricted euxassay_003197_12
TS23: midbrain marginal layer Strong Regionally restricted euxassay_003197_12
Specimen euxassay_003197_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: ventral grey horn Moderate Regionally restricted euxassay_003197_13
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003197_13
TS23: telencephalon septum Present euxassay_003197_13
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_003197_13
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_003197_13
TS23: midbrain mantle layer Strong Regionally restricted euxassay_003197_13
TS23: midbrain marginal layer Strong Regionally restricted euxassay_003197_13
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_003197_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_003197_13
Specimen euxassay_003197_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: pancreas Strong Regionally restricted euxassay_003197_14
TS23: ventral grey horn Moderate Regionally restricted euxassay_003197_14
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003197_14
TS23: telencephalon septum Present euxassay_003197_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_003197_14
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_003197_14
TS23: midbrain marginal layer Strong Regionally restricted euxassay_003197_14
TS23: midbrain mantle layer Strong Regionally restricted euxassay_003197_14
TS23: pons mantle layer Strong Regionally restricted euxassay_003197_14
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_003197_14
Specimen euxassay_003197_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_003197_15
TS23: pancreas Strong Regionally restricted euxassay_003197_15
TS23: ventral grey horn Moderate Regionally restricted euxassay_003197_15
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003197_15
TS23: telencephalon septum Present euxassay_003197_15
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_003197_15
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_003197_15
TS23: midbrain marginal layer Strong Regionally restricted euxassay_003197_15
TS23: midbrain mantle layer Strong Regionally restricted euxassay_003197_15
TS23: pons mantle layer Strong Regionally restricted euxassay_003197_15
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_003197_15
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_003197_15
Specimen euxassay_003197_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003197_16
TS23: pancreas Strong Regionally restricted euxassay_003197_16
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_003197_16
TS23: telencephalon septum Present euxassay_003197_16
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_003197_16
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_003197_16
TS23: midbrain marginal layer Strong Regionally restricted euxassay_003197_16
TS23: midbrain mantle layer Strong Regionally restricted euxassay_003197_16
TS23: metencephalon rest of alar plate mantle layer Strong Regionally restricted euxassay_003197_16
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_003197_16
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_003197_16
Specimen euxassay_003197_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_003197_17
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_003197_17
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_003197_17
TS23: midbrain marginal layer Strong Regionally restricted euxassay_003197_17
TS23: midbrain mantle layer Strong Regionally restricted euxassay_003197_17
TS23: pons mantle layer Strong Regionally restricted euxassay_003197_17
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_003197_17
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_003197_17
Specimen euxassay_003197_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003197_18
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_003197_18
TS23: dorsal root ganglion Weak Regionally restricted euxassay_003197_18
TS23: midbrain mantle layer Strong Regionally restricted euxassay_003197_18
TS23: pons mantle layer Strong Regionally restricted euxassay_003197_18
Specimen euxassay_003197_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_003197_19
TS23: facial ganglion Moderate Regionally restricted euxassay_003197_19
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_003197_19
TS23: pons mantle layer Strong Regionally restricted euxassay_003197_19
Specimen euxassay_003197_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003197_20
TS23: facial ganglion Strong Regionally restricted euxassay_003197_20
Specimen euxassay_003197_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003197_21
Specimen euxassay_003197_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_003197_22
TS23: neural retina Strong Regionally restricted euxassay_003197_22
Specimen euxassay_003197_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_003197_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory