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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4826817
Gene symbol: Ntn1
Gene name: netrin 1
Probe: T36707
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen S6 A/B - Ntn1: embryonic day 14.5 (more )
Note: This specimen is a merged color composite; it was assumed this image was derived from specimens in this assay. Its annotations were inferred by a GXD curator using the structure key presented in the figure legend.
Structure Level Pattern Image Note
TS23: lateral ventricle choroid plexus Present S6B
TS23: telencephalon septum Present S6B
TS23: thalamus Present S6B
Specimen euxassay_007630_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: anterior abdominal wall muscle Weak Regionally restricted euxassay_007630_01
Specimen euxassay_007630_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_007630_02
TS23: vibrissa Weak Regionally restricted euxassay_007630_02
TS23: stomach Moderate Regionally restricted euxassay_007630_02
TS23: anterior abdominal wall muscle Weak Regionally restricted euxassay_007630_02
TS23: axial muscle Weak Regionally restricted euxassay_007630_02
Specimen euxassay_007630_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_007630_03
TS23: vibrissa Weak Regionally restricted euxassay_007630_03
TS23: stomach Moderate Regionally restricted euxassay_007630_03
TS23: lung Weak Regionally restricted euxassay_007630_03
TS23: saccule Weak Regionally restricted euxassay_007630_03
TS23: axial muscle Weak Regionally restricted euxassay_007630_03
TS23: anterior abdominal wall muscle Weak Regionally restricted euxassay_007630_03
Specimen euxassay_007630_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: extrinsic ocular muscle Weak Regionally restricted euxassay_007630_04
TS23: vibrissa Weak Regionally restricted euxassay_007630_04
TS23: stomach Moderate Regionally restricted euxassay_007630_04
TS23: midgut Weak Regionally restricted euxassay_007630_04
TS23: lung Weak Regionally restricted euxassay_007630_04
TS23: saccule Weak Regionally restricted euxassay_007630_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007630_04
Specimen euxassay_007630_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Weak Regionally restricted euxassay_007630_05
TS23: stomach Moderate Regionally restricted euxassay_007630_05
TS23: lung Weak Regionally restricted euxassay_007630_05
TS23: saccule Weak Regionally restricted euxassay_007630_05
TS23: anterior abdominal wall muscle Weak Regionally restricted euxassay_007630_05
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_007630_05
Specimen euxassay_007630_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_007630_06
TS23: olfactory epithelium Weak Regionally restricted euxassay_007630_06
TS23: lung Weak Regionally restricted euxassay_007630_06
TS23: heart ventricle Weak Regionally restricted euxassay_007630_06
TS23: anterior abdominal wall muscle Weak Regionally restricted euxassay_007630_06
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_007630_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007630_06
Specimen euxassay_007630_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_007630_07
TS23: midgut Moderate Regionally restricted euxassay_007630_07
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007630_07
TS23: lung Weak Regionally restricted euxassay_007630_07
TS23: heart ventricle Weak Regionally restricted euxassay_007630_07
TS23: renal cortex Strong Regionally restricted euxassay_007630_07
TS23: saccule Weak Regionally restricted euxassay_007630_07
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007630_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007630_07
Specimen euxassay_007630_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_007630_08
TS23: stomach Moderate Regionally restricted euxassay_007630_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007630_08
TS23: lung Weak Regionally restricted euxassay_007630_08
TS23: heart ventricle Weak Regionally restricted euxassay_007630_08
TS23: renal cortex Strong Regionally restricted euxassay_007630_08
TS23: saccule Weak Regionally restricted euxassay_007630_08
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007630_08
TS23: pons ventricular layer Strong Regionally restricted euxassay_007630_08
TS23: midbrain mantle layer Strong Single cells euxassay_007630_08
TS23: midbrain-hindbrain junction Present euxassay_007630_08
Specimen euxassay_007630_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_007630_09
TS23: stomach Weak Regionally restricted euxassay_007630_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007630_09
TS23: lung Weak Regionally restricted euxassay_007630_09
TS23: heart ventricle Weak Regionally restricted euxassay_007630_09
TS23: renal cortex Strong Regionally restricted euxassay_007630_09
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007630_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007630_09
TS23: pons ventricular layer Strong Regionally restricted euxassay_007630_09
TS23: midbrain mantle layer Strong Single cells euxassay_007630_09
TS23: midbrain-hindbrain junction Present euxassay_007630_09
Specimen euxassay_007630_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_007630_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007630_10
TS23: lung Weak Regionally restricted euxassay_007630_10
TS23: heart ventricle Weak Regionally restricted euxassay_007630_10
TS23: renal cortex Strong Regionally restricted euxassay_007630_10
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007630_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007630_10
TS23: pons ventricular layer Strong Regionally restricted euxassay_007630_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007630_10
TS23: midbrain mantle layer Strong Single cells euxassay_007630_10
TS23: midbrain-hindbrain junction Present euxassay_007630_10
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_007630_10
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_007630_10
TS23: dorsal grey horn Strong Single cells euxassay_007630_10
Specimen euxassay_007630_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_007630_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007630_11
TS23: lung Weak Regionally restricted euxassay_007630_11
TS23: heart ventricle Weak Regionally restricted euxassay_007630_11
TS23: tongue Strong Regionally restricted euxassay_007630_11
TS23: axial skeleton tail region Strong Regionally restricted euxassay_007630_11
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007630_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007630_11
TS23: pons ventricular layer Strong Regionally restricted euxassay_007630_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007630_11
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_007630_11
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_007630_11
TS23: ventral grey horn Strong Single cells euxassay_007630_11
TS23: dorsal grey horn Strong Single cells euxassay_007630_11
Specimen euxassay_007630_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_007630_12
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007630_12
TS23: heart ventricle Weak Regionally restricted euxassay_007630_12
TS23: esophagus Moderate Regionally restricted euxassay_007630_12
TS23: tongue Strong Regionally restricted euxassay_007630_12
TS23: axial skeleton tail region Strong Regionally restricted euxassay_007630_12
TS23: axial skeleton Strong Regionally restricted euxassay_007630_12
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_007630_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007630_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_007630_12
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_007630_12
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_007630_12
TS23: spinal cord ventricular layer Strong Single cells euxassay_007630_12
TS23: ventral grey horn Strong Single cells euxassay_007630_12
TS23: dorsal grey horn Strong Single cells euxassay_007630_12
Specimen euxassay_007630_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_007630_13
TS23: hindgut Moderate Regionally restricted euxassay_007630_13
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007630_13
TS23: heart ventricle Weak Regionally restricted euxassay_007630_13
TS23: esophagus Moderate Regionally restricted euxassay_007630_13
TS23: tongue Strong Regionally restricted euxassay_007630_13
TS23: axial skeleton tail region Strong Regionally restricted euxassay_007630_13
TS23: axial skeleton Strong Regionally restricted euxassay_007630_13
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_007630_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007630_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_007630_13
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_007630_13
TS23: midbrain mantle layer Strong Single cells euxassay_007630_13
TS23: midbrain-hindbrain junction Present euxassay_007630_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_007630_13
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_007630_13
TS23: ventral grey horn Strong Single cells euxassay_007630_13
TS23: dorsal grey horn Strong Single cells euxassay_007630_13
TS23: spinal cord ventricular layer Strong Single cells euxassay_007630_13
Specimen euxassay_007630_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_007630_14
TS23: hindgut Moderate Regionally restricted euxassay_007630_14
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007630_14
TS23: lung Moderate Regionally restricted euxassay_007630_14
TS23: heart ventricle Weak Regionally restricted euxassay_007630_14
TS23: tongue Moderate Regionally restricted euxassay_007630_14
TS23: axial skeleton tail region Strong Regionally restricted euxassay_007630_14
TS23: axial skeleton Strong Regionally restricted euxassay_007630_14
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_007630_14
TS23: pons ventricular layer Strong Regionally restricted euxassay_007630_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007630_14
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_007630_14
TS23: midbrain mantle layer Strong Single cells euxassay_007630_14
TS23: midbrain-hindbrain junction Present euxassay_007630_14
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_007630_14
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_007630_14
TS23: ventral grey horn Strong Single cells euxassay_007630_14
TS23: dorsal grey horn Strong Single cells euxassay_007630_14
TS23: spinal cord ventricular layer Strong Single cells euxassay_007630_14
Specimen euxassay_007630_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: hindgut Moderate Regionally restricted euxassay_007630_15
TS23: midgut Moderate Regionally restricted euxassay_007630_15
TS23: olfactory epithelium Moderate Regionally restricted euxassay_007630_15
TS23: lung Moderate Regionally restricted euxassay_007630_15
TS23: renal cortex Strong Regionally restricted euxassay_007630_15
TS23: axial skeleton tail region Strong Regionally restricted euxassay_007630_15
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_007630_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007630_15
TS23: pons ventricular layer Strong Regionally restricted euxassay_007630_15
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_007630_15
TS23: midbrain mantle layer Strong Single cells euxassay_007630_15
TS23: midbrain-hindbrain junction Present euxassay_007630_15
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_007630_15
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_007630_15
TS23: dorsal grey horn Strong Single cells euxassay_007630_15
TS23: ventral grey horn Strong Single cells euxassay_007630_15
Specimen euxassay_007630_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_007630_16
TS23: olfactory epithelium Weak Regionally restricted euxassay_007630_16
TS23: lung Moderate Regionally restricted euxassay_007630_16
TS23: renal cortex Strong Regionally restricted euxassay_007630_16
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_007630_16
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_007630_16
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007630_16
TS23: pons ventricular layer Strong Regionally restricted euxassay_007630_16
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_007630_16
TS23: midbrain mantle layer Strong Single cells euxassay_007630_16
TS23: midbrain-hindbrain junction Present euxassay_007630_16
TS23: dorsal grey horn Moderate Single cells euxassay_007630_16
TS23: ventral grey horn Moderate Single cells euxassay_007630_16
Specimen euxassay_007630_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Weak Regionally restricted euxassay_007630_17
TS23: lung Moderate Regionally restricted euxassay_007630_17
TS23: renal cortex Strong Regionally restricted euxassay_007630_17
TS23: saccule Weak Regionally restricted euxassay_007630_17
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007630_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007630_17
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_007630_17
TS23: pons ventricular layer Strong Regionally restricted euxassay_007630_17
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007630_17
TS23: midbrain mantle layer Strong Single cells euxassay_007630_17
TS23: midbrain-hindbrain junction Present euxassay_007630_17
TS23: dorsal grey horn Moderate Single cells euxassay_007630_17
Specimen euxassay_007630_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Weak Regionally restricted euxassay_007630_18
TS23: midgut Weak Regionally restricted euxassay_007630_18
TS23: lung Moderate Regionally restricted euxassay_007630_18
TS23: renal cortex Strong Regionally restricted euxassay_007630_18
TS23: saccule Weak Regionally restricted euxassay_007630_18
TS23: anterior abdominal wall muscle Weak Regionally restricted euxassay_007630_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007630_18
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007630_18
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007630_18
TS23: pons ventricular layer Strong Regionally restricted euxassay_007630_18
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_007630_18
TS23: midbrain mantle layer Strong Single cells euxassay_007630_18
TS23: midbrain-hindbrain junction Present euxassay_007630_18
Specimen euxassay_007630_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vibrissa Weak Regionally restricted euxassay_007630_19
TS23: lung Moderate Regionally restricted euxassay_007630_19
TS23: renal cortex Strong Regionally restricted euxassay_007630_19
TS23: saccule Moderate Regionally restricted euxassay_007630_19
TS23: anterior abdominal wall muscle Weak Regionally restricted euxassay_007630_19
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007630_19
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007630_19
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_007630_19
TS23: pons ventricular layer Strong Regionally restricted euxassay_007630_19
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_007630_19
TS23: midbrain mantle layer Strong Single cells euxassay_007630_19
TS23: midbrain-hindbrain junction Present euxassay_007630_19
Specimen euxassay_007630_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_007630_20
TS23: lung Moderate Regionally restricted euxassay_007630_20
TS23: saccule Moderate Regionally restricted euxassay_007630_20
TS23: anterior abdominal wall muscle Weak Regionally restricted euxassay_007630_20
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007630_20
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_007630_20
Specimen euxassay_007630_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_007630_21
TS23: lung Moderate Regionally restricted euxassay_007630_21
TS23: saccule Strong Regionally restricted euxassay_007630_21
TS23: axial muscle Moderate Regionally restricted euxassay_007630_21
TS23: anterior abdominal wall muscle Moderate Regionally restricted euxassay_007630_21
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_007630_21
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_007630_21
Specimen euxassay_007630_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_007630_22
TS23: lung Moderate Regionally restricted euxassay_007630_22
TS23: axial muscle Moderate Regionally restricted euxassay_007630_22
TS23: anterior abdominal wall muscle Moderate Regionally restricted euxassay_007630_22
Specimen euxassay_007630_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_007630_23
TS23: saccule Moderate Regionally restricted euxassay_007630_23
TS23: axial muscle Moderate Regionally restricted euxassay_007630_23
TS23: anterior abdominal wall muscle Moderate Regionally restricted euxassay_007630_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory