About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4826639
Gene symbol: Ndufa9
Gene name: NADH:ubiquinone oxidoreductase subunit A9
Probe: T50707
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_018912_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: orbito-sphenoid Weak Regionally restricted euxassay_018912_01
TS23: liver Weak Regionally restricted euxassay_018912_01
TS23: stomach Weak Regionally restricted euxassay_018912_01
TS23: neural retina Weak Regionally restricted euxassay_018912_01
Specimen euxassay_018912_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018912_02
TS23: orbito-sphenoid Weak Regionally restricted euxassay_018912_02
TS23: liver Weak Regionally restricted euxassay_018912_02
TS23: mandible Weak Regionally restricted euxassay_018912_02
TS23: stomach Weak Regionally restricted euxassay_018912_02
TS23: neural retina Weak Regionally restricted euxassay_018912_02
Specimen euxassay_018912_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018912_03
TS23: facial ganglion Weak Regionally restricted euxassay_018912_03
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_018912_03
TS23: liver Weak Regionally restricted euxassay_018912_03
TS23: mandible Weak Regionally restricted euxassay_018912_03
TS23: lung Weak Regionally restricted euxassay_018912_03
TS23: stomach Weak Regionally restricted euxassay_018912_03
Specimen euxassay_018912_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018912_04
TS23: facial ganglion Weak Regionally restricted euxassay_018912_04
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_018912_04
TS23: liver Weak Regionally restricted euxassay_018912_04
TS23: mandible Weak Regionally restricted euxassay_018912_04
TS23: lung Weak Regionally restricted euxassay_018912_04
TS23: axial musculature Weak Regionally restricted euxassay_018912_04
TS23: stomach Weak Regionally restricted euxassay_018912_04
Specimen euxassay_018912_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018912_05
TS23: vibrissa Weak Regionally restricted euxassay_018912_05
TS23: orbito-sphenoid Weak Regionally restricted euxassay_018912_05
TS23: liver Weak Regionally restricted euxassay_018912_05
TS23: mandible Weak Regionally restricted euxassay_018912_05
TS23: maxilla Weak Regionally restricted euxassay_018912_05
TS23: lung Weak Regionally restricted euxassay_018912_05
TS23: axial musculature Weak Regionally restricted euxassay_018912_05
TS23: testis Weak Regionally restricted euxassay_018912_05
TS23: stomach Weak Regionally restricted euxassay_018912_05
Specimen euxassay_018912_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018912_06
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_018912_06
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018912_06
TS23: vibrissa Weak Regionally restricted euxassay_018912_06
TS23: pons mantle layer Weak Regionally restricted euxassay_018912_06 trigeminal motor nucleus
TS23: liver Weak Regionally restricted euxassay_018912_06
TS23: maxilla Weak Regionally restricted euxassay_018912_06
TS23: mandible Weak Regionally restricted euxassay_018912_06
TS23: lung Weak Regionally restricted euxassay_018912_06
TS23: axial musculature Weak Regionally restricted euxassay_018912_06
TS23: testis Weak Regionally restricted euxassay_018912_06
TS23: stomach Weak Regionally restricted euxassay_018912_06
TS23: midgut Weak Regionally restricted euxassay_018912_06
Specimen euxassay_018912_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018912_07
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_018912_07
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018912_07
TS23: vibrissa Weak Regionally restricted euxassay_018912_07
TS23: liver Weak Regionally restricted euxassay_018912_07
TS23: maxilla Weak Regionally restricted euxassay_018912_07
TS23: mandible Weak Regionally restricted euxassay_018912_07
TS23: lung Weak Regionally restricted euxassay_018912_07
TS23: axial musculature Weak Regionally restricted euxassay_018912_07
TS23: testis Weak Regionally restricted euxassay_018912_07
TS23: midgut Weak Regionally restricted euxassay_018912_07
TS23: stomach Weak Regionally restricted euxassay_018912_07
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018912_07
Specimen euxassay_018912_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018912_08
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018912_08
TS23: vibrissa Weak Regionally restricted euxassay_018912_08
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_018912_08 facial motor nucleus
TS23: liver Weak Regionally restricted euxassay_018912_08
TS23: mandible Weak Regionally restricted euxassay_018912_08
TS23: maxilla Weak Regionally restricted euxassay_018912_08
TS23: pancreas Weak Regionally restricted euxassay_018912_08
TS23: lung Weak Regionally restricted euxassay_018912_08
TS23: stomach Weak Regionally restricted euxassay_018912_08
TS23: midgut Weak Regionally restricted euxassay_018912_08
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018912_08
Specimen euxassay_018912_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018912_09
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_018912_09 facial motor nucleus
TS23: liver Weak Regionally restricted euxassay_018912_09
TS23: mandible Weak Regionally restricted euxassay_018912_09
TS23: maxilla Weak Regionally restricted euxassay_018912_09
TS23: pancreas Weak Regionally restricted euxassay_018912_09
TS23: lung Weak Regionally restricted euxassay_018912_09
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_018912_09
TS23: midgut Weak Regionally restricted euxassay_018912_09
TS23: stomach Weak Regionally restricted euxassay_018912_09
TS23: clavicle Weak Regionally restricted euxassay_018912_09
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018912_09
Specimen euxassay_018912_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Weak Regionally restricted euxassay_018912_10
TS23: mandible Weak Regionally restricted euxassay_018912_10
TS23: pancreas Weak Regionally restricted euxassay_018912_10
TS23: thymus primordium Weak Regionally restricted euxassay_018912_10
TS23: thyroid gland Weak Regionally restricted euxassay_018912_10
TS23: ventral grey horn Moderate Regionally restricted euxassay_018912_10
TS23: lung Weak Regionally restricted euxassay_018912_10
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_018912_10
TS23: midgut Weak Regionally restricted euxassay_018912_10
TS23: clavicle Weak Regionally restricted euxassay_018912_10
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018912_10
Specimen euxassay_018912_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Weak Regionally restricted euxassay_018912_11
TS23: upper jaw incisor Weak Regionally restricted euxassay_018912_11
TS23: lower jaw incisor Weak Regionally restricted euxassay_018912_11
TS23: mandible Weak Regionally restricted euxassay_018912_11
TS23: pancreas Weak Regionally restricted euxassay_018912_11
TS23: thymus primordium Weak Regionally restricted euxassay_018912_11
TS23: thyroid gland Weak Regionally restricted euxassay_018912_11
TS23: ventral grey horn Moderate Regionally restricted euxassay_018912_11
TS23: lung Weak Regionally restricted euxassay_018912_11
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_018912_11
TS23: midgut Weak Regionally restricted euxassay_018912_11
Specimen euxassay_018912_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Weak Regionally restricted euxassay_018912_12
TS23: upper jaw incisor Weak Regionally restricted euxassay_018912_12
TS23: lower jaw incisor Weak Regionally restricted euxassay_018912_12
TS23: pancreas Weak Regionally restricted euxassay_018912_12
TS23: thymus primordium Weak Regionally restricted euxassay_018912_12
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_018912_12
TS23: midgut Weak Regionally restricted euxassay_018912_12
TS23: hindgut Weak Regionally restricted euxassay_018912_12
Specimen euxassay_018912_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver Weak Regionally restricted euxassay_018912_13
TS23: pancreas Weak Regionally restricted euxassay_018912_13
TS23: thymus primordium Weak Regionally restricted euxassay_018912_13
TS23: ventral grey horn Moderate Regionally restricted euxassay_018912_13
TS23: lung Weak Regionally restricted euxassay_018912_13
TS23: midgut Weak Regionally restricted euxassay_018912_13
TS23: stomach Weak Regionally restricted euxassay_018912_13
Specimen euxassay_018912_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_018912_14 facial motor nucleus
TS23: liver Weak Regionally restricted euxassay_018912_14
TS23: upper jaw incisor Weak Regionally restricted euxassay_018912_14
TS23: lower jaw incisor Weak Regionally restricted euxassay_018912_14
TS23: mandible Weak Regionally restricted euxassay_018912_14
TS23: pancreas Weak Regionally restricted euxassay_018912_14
TS23: thymus primordium Weak Regionally restricted euxassay_018912_14
TS23: thyroid gland Weak Regionally restricted euxassay_018912_14
TS23: ventral grey horn Moderate Regionally restricted euxassay_018912_14
TS23: lung Weak Regionally restricted euxassay_018912_14
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_018912_14
TS23: midgut Weak Regionally restricted euxassay_018912_14
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018912_14
Specimen euxassay_018912_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018912_15
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_018912_15 facial motor nucleus
TS23: liver Weak Regionally restricted euxassay_018912_15
TS23: maxilla Weak Regionally restricted euxassay_018912_15
TS23: mandible Weak Regionally restricted euxassay_018912_15
TS23: pancreas Weak Regionally restricted euxassay_018912_15
TS23: lung Weak Regionally restricted euxassay_018912_15
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_018912_15
TS23: midgut Weak Regionally restricted euxassay_018912_15
TS23: clavicle Weak Regionally restricted euxassay_018912_15
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018912_15
Specimen euxassay_018912_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018912_16
TS23: vagus ganglion Weak Regionally restricted euxassay_018912_16
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018912_16
TS23: pons mantle layer Weak Regionally restricted euxassay_018912_16 trigeminal motor nucleus
TS23: liver Weak Regionally restricted euxassay_018912_16
TS23: maxilla Weak Regionally restricted euxassay_018912_16
TS23: mandible Weak Regionally restricted euxassay_018912_16
TS23: lung Weak Regionally restricted euxassay_018912_16
TS23: olfactory cortex mantle layer Weak Regionally restricted euxassay_018912_16
TS23: midgut Weak Regionally restricted euxassay_018912_16
TS23: clavicle Weak Regionally restricted euxassay_018912_16
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018912_16
Specimen euxassay_018912_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018912_17
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_018912_17
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018912_17
TS23: liver Weak Regionally restricted euxassay_018912_17
TS23: maxilla Weak Regionally restricted euxassay_018912_17
TS23: mandible Weak Regionally restricted euxassay_018912_17
TS23: lung Weak Regionally restricted euxassay_018912_17
TS23: midgut Weak Regionally restricted euxassay_018912_17
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018912_17
Specimen euxassay_018912_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018912_18
TS23: facial ganglion Weak Regionally restricted euxassay_018912_18
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018912_18
TS23: liver Weak Regionally restricted euxassay_018912_18
TS23: maxilla Weak Regionally restricted euxassay_018912_18
TS23: mandible Weak Regionally restricted euxassay_018912_18
TS23: lung Weak Regionally restricted euxassay_018912_18
TS23: axial musculature Weak Regionally restricted euxassay_018912_18
TS23: testis Weak Regionally restricted euxassay_018912_18
TS23: midgut Weak Regionally restricted euxassay_018912_18
Specimen euxassay_018912_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018912_19
TS23: facial ganglion Weak Regionally restricted euxassay_018912_19
TS23: vibrissa Weak Regionally restricted euxassay_018912_19
TS23: liver Weak Regionally restricted euxassay_018912_19
TS23: maxilla Weak Regionally restricted euxassay_018912_19
TS23: mandible Weak Regionally restricted euxassay_018912_19
TS23: lung Weak Regionally restricted euxassay_018912_19
TS23: axial musculature Weak Regionally restricted euxassay_018912_19
Specimen euxassay_018912_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018912_20
TS23: vibrissa Weak Regionally restricted euxassay_018912_20
TS23: orbito-sphenoid Weak Regionally restricted euxassay_018912_20
TS23: liver Weak Regionally restricted euxassay_018912_20
TS23: mandible Weak Regionally restricted euxassay_018912_20
TS23: maxilla Weak Regionally restricted euxassay_018912_20
TS23: lung Weak Regionally restricted euxassay_018912_20
TS23: axial musculature Weak Regionally restricted euxassay_018912_20
TS23: testis Weak Regionally restricted euxassay_018912_20
Specimen euxassay_018912_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018912_21
TS23: vibrissa Weak Regionally restricted euxassay_018912_21
TS23: orbito-sphenoid Weak Regionally restricted euxassay_018912_21
TS23: liver Weak Regionally restricted euxassay_018912_21
TS23: mandible Weak Regionally restricted euxassay_018912_21
TS23: lung Weak Regionally restricted euxassay_018912_21
TS23: axial musculature Weak Regionally restricted euxassay_018912_21
Specimen euxassay_018912_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: orbito-sphenoid Weak Regionally restricted euxassay_018912_22
TS23: liver Weak Regionally restricted euxassay_018912_22
TS23: neural retina Weak Regionally restricted euxassay_018912_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory