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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4826490
Gene symbol: Mthfd1
Gene name: methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
Probe: MGC clone 6417
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004845_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial musculature Strong Regionally restricted euxassay_004845_01
TS23: left lung Strong Regionally restricted euxassay_004845_01
TS23: liver left lobe Moderate Regionally restricted euxassay_004845_01
TS23: stomach fundus Moderate Regionally restricted euxassay_004845_01
Specimen euxassay_004845_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial musculature Strong Regionally restricted euxassay_004845_02
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_02
TS23: left lung Strong Regionally restricted euxassay_004845_02
TS23: liver left lobe Moderate Regionally restricted euxassay_004845_02
TS23: stomach fundus Moderate Regionally restricted euxassay_004845_02
Specimen euxassay_004845_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial musculature Strong Regionally restricted euxassay_004845_03
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_03
TS23: left lung Strong Regionally restricted euxassay_004845_03
TS23: liver left lobe Moderate Regionally restricted euxassay_004845_03
TS23: stomach fundus Moderate Regionally restricted euxassay_004845_03
Specimen euxassay_004845_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial musculature Strong Regionally restricted euxassay_004845_04
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_04
TS23: left lung Strong Regionally restricted euxassay_004845_04
TS23: liver left lobe Moderate Regionally restricted euxassay_004845_04
TS23: stomach fundus Moderate Regionally restricted euxassay_004845_04
Specimen euxassay_004845_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial musculature Strong Regionally restricted euxassay_004845_05
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_05
TS23: left lung Strong Regionally restricted euxassay_004845_05
TS23: liver left lobe Moderate Regionally restricted euxassay_004845_05
TS23: stomach fundus Moderate Regionally restricted euxassay_004845_05
Specimen euxassay_004845_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial musculature Strong Regionally restricted euxassay_004845_06
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_06
TS23: left lung Strong Regionally restricted euxassay_004845_06
TS23: submandibular gland primordium Strong Regionally restricted euxassay_004845_06
TS23: liver left lobe Moderate Regionally restricted euxassay_004845_06
TS23: stomach fundus Moderate Regionally restricted euxassay_004845_06
Specimen euxassay_004845_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_07
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_004845_07
TS23: inferior colliculus Present euxassay_004845_07
TS23: left lung Strong Regionally restricted euxassay_004845_07
TS23: submandibular gland primordium Strong Regionally restricted euxassay_004845_07
TS23: pancreas Strong Regionally restricted euxassay_004845_07
TS23: liver left lobe Moderate Regionally restricted euxassay_004845_07
TS23: stomach fundus Moderate Regionally restricted euxassay_004845_07
TS23: upper jaw molar Moderate Regionally restricted euxassay_004845_07
TS23: lower jaw molar Moderate Regionally restricted euxassay_004845_07
TS23: vibrissa Moderate Regionally restricted euxassay_004845_07
Specimen euxassay_004845_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_004845_08
TS23: inferior colliculus Present euxassay_004845_08
TS23: left lung Strong Regionally restricted euxassay_004845_08
TS23: submandibular gland primordium Strong Regionally restricted euxassay_004845_08
TS23: pancreas Strong Regionally restricted euxassay_004845_08
TS23: liver left lobe Moderate Regionally restricted euxassay_004845_08
TS23: stomach fundus Weak Regionally restricted euxassay_004845_08
TS23: upper jaw molar Moderate Regionally restricted euxassay_004845_08
TS23: vibrissa Moderate Regionally restricted euxassay_004845_08
Specimen euxassay_004845_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_004845_09
TS23: inferior colliculus Present euxassay_004845_09
TS23: thymus primordium Strong Uniform euxassay_004845_09
TS23: left lung Strong Regionally restricted euxassay_004845_09
TS23: submandibular gland primordium Strong Regionally restricted euxassay_004845_09
TS23: pancreas Strong Regionally restricted euxassay_004845_09
TS23: liver left lobe Moderate Regionally restricted euxassay_004845_09
TS23: stomach fundus Weak Regionally restricted euxassay_004845_09
TS23: upper jaw molar Moderate Regionally restricted euxassay_004845_09
TS23: lower jaw molar Moderate Regionally restricted euxassay_004845_09
TS23: vibrissa Moderate Regionally restricted euxassay_004845_09
Specimen euxassay_004845_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_004845_10
TS23: inferior colliculus Present euxassay_004845_10
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004845_10
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004845_10
TS23: thymus primordium Strong Uniform euxassay_004845_10
TS23: left lung Strong Regionally restricted euxassay_004845_10
TS23: pancreas Strong Regionally restricted euxassay_004845_10
TS23: liver left lobe Moderate Regionally restricted euxassay_004845_10
TS23: stomach fundus Weak Regionally restricted euxassay_004845_10
TS23: lower jaw incisor Moderate Regionally restricted euxassay_004845_10
TS23: esophagus Moderate Regionally restricted euxassay_004845_10
Specimen euxassay_004845_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_004845_11
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_004845_11
TS23: inferior colliculus Present euxassay_004845_11
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004845_11
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004845_11
TS23: thymus primordium Strong Uniform euxassay_004845_11
TS23: left lung Strong Regionally restricted euxassay_004845_11
TS23: pancreas Strong Regionally restricted euxassay_004845_11
TS23: liver left lobe Moderate Regionally restricted euxassay_004845_11
TS23: upper jaw incisor Moderate Regionally restricted euxassay_004845_11
TS23: lower jaw incisor Moderate Regionally restricted euxassay_004845_11
TS23: esophagus Moderate Regionally restricted euxassay_004845_11
Specimen euxassay_004845_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_004845_12
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_004845_12
TS23: inferior colliculus Present euxassay_004845_12
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_004845_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_004845_12
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004845_12
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004845_12
TS23: thymus primordium Strong Uniform euxassay_004845_12
TS23: left lung Strong Regionally restricted euxassay_004845_12
TS23: pancreas Strong Regionally restricted euxassay_004845_12
TS23: liver left lobe Moderate Regionally restricted euxassay_004845_12
TS23: upper jaw incisor Moderate Regionally restricted euxassay_004845_12
TS23: lower jaw incisor Moderate Regionally restricted euxassay_004845_12
Specimen euxassay_004845_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_004845_13
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_004845_13
TS23: inferior colliculus Present euxassay_004845_13
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_004845_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_004845_13
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004845_13
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004845_13
TS23: thymus primordium Strong Uniform euxassay_004845_13
TS23: right lung Strong Regionally restricted euxassay_004845_13
TS23: pancreas Strong Regionally restricted euxassay_004845_13
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_13
TS23: upper jaw incisor Moderate Regionally restricted euxassay_004845_13
Specimen euxassay_004845_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: axial musculature Strong Regionally restricted euxassay_004845_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_004845_14
TS23: inferior colliculus Present euxassay_004845_14
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_004845_14
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_004845_14
TS23: thymus primordium Strong Uniform euxassay_004845_14
TS23: right lung Strong Regionally restricted euxassay_004845_14
TS23: pancreas Strong Regionally restricted euxassay_004845_14
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_14
TS23: lower jaw incisor Moderate Regionally restricted euxassay_004845_14
Specimen euxassay_004845_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: axial musculature Strong Regionally restricted euxassay_004845_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_004845_15
TS23: inferior colliculus Present euxassay_004845_15
TS23: right lung Strong Regionally restricted euxassay_004845_15
TS23: submandibular gland primordium Strong Regionally restricted euxassay_004845_15
TS23: pancreas Strong Regionally restricted euxassay_004845_15
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_15
TS23: midgut loop lumen Moderate Regionally restricted euxassay_004845_15
TS23: upper jaw incisor Moderate Regionally restricted euxassay_004845_15
TS23: lower jaw incisor Moderate Regionally restricted euxassay_004845_15
Specimen euxassay_004845_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: axial musculature Strong Regionally restricted euxassay_004845_16
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_16
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_004845_16
TS23: inferior colliculus Present euxassay_004845_16
TS23: right lung Moderate Regionally restricted euxassay_004845_16
TS23: submandibular gland primordium Strong Regionally restricted euxassay_004845_16
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_16
TS23: midgut loop lumen Moderate Regionally restricted euxassay_004845_16
TS23: upper jaw incisor Moderate Regionally restricted euxassay_004845_16
TS23: lower jaw incisor Moderate Regionally restricted euxassay_004845_16
Specimen euxassay_004845_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial musculature Strong Regionally restricted euxassay_004845_17
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_004845_17
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_17
TS23: right lung Moderate Regionally restricted euxassay_004845_17
TS23: submandibular gland primordium Strong Regionally restricted euxassay_004845_17
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_17
TS23: midgut loop lumen Moderate Regionally restricted euxassay_004845_17
TS23: upper jaw molar Moderate Regionally restricted euxassay_004845_17
TS23: upper jaw incisor Moderate Regionally restricted euxassay_004845_17
TS23: lower jaw molar Moderate Regionally restricted euxassay_004845_17
Specimen euxassay_004845_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial musculature Strong Regionally restricted euxassay_004845_18
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_18
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_004845_18
TS23: right lung Moderate Regionally restricted euxassay_004845_18
TS23: submandibular gland primordium Strong Regionally restricted euxassay_004845_18
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_18
TS23: midgut loop lumen Moderate Regionally restricted euxassay_004845_18
TS23: upper jaw molar Moderate Regionally restricted euxassay_004845_18
TS23: lower jaw molar Moderate Regionally restricted euxassay_004845_18
Specimen euxassay_004845_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial musculature Strong Regionally restricted euxassay_004845_19
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_19
TS23: right lung Moderate Regionally restricted euxassay_004845_19
TS23: submandibular gland primordium Strong Regionally restricted euxassay_004845_19
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_19
TS23: midgut loop lumen Moderate Regionally restricted euxassay_004845_19
TS23: upper jaw molar Moderate Regionally restricted euxassay_004845_19
TS23: lower jaw molar Moderate Regionally restricted euxassay_004845_19
Specimen euxassay_004845_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial musculature Strong Regionally restricted euxassay_004845_20
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_20
TS23: right lung Moderate Regionally restricted euxassay_004845_20
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_20
TS23: midgut loop lumen Moderate Regionally restricted euxassay_004845_20
TS23: upper jaw molar Moderate Regionally restricted euxassay_004845_20
TS23: lower jaw molar Moderate Regionally restricted euxassay_004845_20
TS23: vibrissa Weak Regionally restricted euxassay_004845_20
Specimen euxassay_004845_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_21
TS23: right lung Moderate Regionally restricted euxassay_004845_21
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_21
TS23: midgut loop lumen Moderate Regionally restricted euxassay_004845_21
TS23: vibrissa Weak Regionally restricted euxassay_004845_21
Specimen euxassay_004845_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_22
TS23: right lung Moderate Regionally restricted euxassay_004845_22
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_22
TS23: midgut loop lumen Moderate Regionally restricted euxassay_004845_22
TS23: vibrissa Weak Regionally restricted euxassay_004845_22
Specimen euxassay_004845_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_23
TS23: right lung Moderate Regionally restricted euxassay_004845_23
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_23
TS23: midgut loop lumen Moderate Regionally restricted euxassay_004845_23
Specimen euxassay_004845_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_004845_24
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_24
TS23: midgut loop lumen Moderate Regionally restricted euxassay_004845_24
Specimen euxassay_004845_25: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_25
Specimen euxassay_004845_26: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_26
Specimen euxassay_004845_27: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver right lobe Moderate Regionally restricted euxassay_004845_27
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory