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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4826008
Gene symbol: Lrrtm1
Gene name: leucine rich repeat transmembrane neuronal 1
Probe: IMAGE clone 478323
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen 6D - Lrrtm1: embryonic day 14.5 (more )
Note: This specimen is a merged color composite; it was assumed this image was derived from specimens in this assay.
Structure Level Pattern Image Note
TS23: dorsal grey horn Present Regionally restricted 6D Expression is present in the spinal reticular nucleus (Rexed's layers 5 and 6).
Specimen euxassay_000022_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_01
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_01
TS23: lower eyelid epithelium Strong Uniform euxassay_000022_01
TS23: upper eyelid epithelium Strong Uniform euxassay_000022_01
TS23: head mesenchyme Strong Regionally restricted euxassay_000022_01
TS23: trigeminal ganglion Moderate Uniform euxassay_000022_01
Specimen euxassay_000022_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: head mesenchyme Strong Regionally restricted euxassay_000022_02
TS23: perioptic mesenchyme Present euxassay_000022_02
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_02
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_02
TS23: trigeminal ganglion Strong Uniform euxassay_000022_02
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_000022_02
TS23: foot Strong Regionally restricted euxassay_000022_02
TS23: hindlimb digit mesenchyme Present Regionally restricted euxassay_000022_02 digital periosteum
Specimen euxassay_000022_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: head mesenchyme Strong Regionally restricted euxassay_000022_03
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_03
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_03
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_000022_03
TS23: metencephalon rest of alar plate mantle layer Moderate Uniform euxassay_000022_03
TS23: trigeminal ganglion Moderate Uniform euxassay_000022_03
TS23: otic capsule Strong Regionally restricted euxassay_000022_03
TS23: interdigital region between hindlimb digits 1 and 2 mesenchyme Strong Regionally restricted euxassay_000022_03
TS23: interdigital region between hindlimb digits 2 and 3 mesenchyme Strong Regionally restricted euxassay_000022_03
TS23: interdigital region between hindlimb digits 3 and 4 mesenchyme Strong Regionally restricted euxassay_000022_03
TS23: interdigital region between hindlimb digits 4 and 5 mesenchyme Strong Regionally restricted euxassay_000022_03
TS23: mesenchyme of metanephros Strong Regionally restricted euxassay_000022_03
TS23: renal capsule Present Regionally restricted euxassay_000022_03 lateral kidney capsule
Specimen euxassay_000022_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_04
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_04
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_000022_04
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000022_04
TS23: trigeminal ganglion Moderate Uniform euxassay_000022_04
TS23: mesenchyme of metanephros Strong Regionally restricted euxassay_000022_04
TS23: renal capsule Present Regionally restricted euxassay_000022_04 lateral kidney capsule
TS23: interdigital region between hindlimb digits 2 and 3 mesenchyme Strong Regionally restricted euxassay_000022_04
TS23: interdigital region between hindlimb digits 3 and 4 mesenchyme Strong Regionally restricted euxassay_000022_04
TS23: interdigital region between hindlimb digits 4 and 5 mesenchyme Strong Regionally restricted euxassay_000022_04
TS23: midbrain mantle layer Moderate Single cells euxassay_000022_04
TS23: midbrain marginal layer Moderate Single cells euxassay_000022_04
TS23: oral cavity Strong Regionally restricted euxassay_000022_04 mesenchyme
Specimen euxassay_000022_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral cavity Strong Regionally restricted euxassay_000022_05 mesenchyme
TS23: trigeminal ganglion Moderate Uniform euxassay_000022_05
TS23: midbrain mantle layer Moderate Single cells euxassay_000022_05
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000022_05
TS23: pons mantle layer Moderate Single cells euxassay_000022_05
TS23: medulla oblongata alar plate mantle layer Moderate Single cells euxassay_000022_05
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_000022_05
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_05
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_05
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_000022_05
Specimen euxassay_000022_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_000022_06
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_06
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_06
TS23: lentiform nucleus Moderate Regionally restricted euxassay_000022_06
TS23: medulla oblongata alar plate mantle layer Moderate Single cells euxassay_000022_06
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_000022_06
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_000022_06
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000022_06
TS23: pons mantle layer Moderate Single cells euxassay_000022_06
TS23: midbrain mantle layer Moderate Uniform euxassay_000022_06
TS23: trigeminal ganglion Moderate Uniform euxassay_000022_06
TS23: vagus ganglion Moderate Uniform euxassay_000022_06
TS23: central nervous system nerve Strong Single cells euxassay_000022_06
TS23: peripheral nerve Present euxassay_000022_06
TS23: oral region Strong Regionally restricted euxassay_000022_06 perioral mesenchyme
TS23: dorsal root ganglion Moderate Uniform euxassay_000022_06
Specimen euxassay_000022_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_000022_07
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_07
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_07
TS23: medulla oblongata alar plate mantle layer Moderate Single cells euxassay_000022_07
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_000022_07
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_000022_07
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000022_07
TS23: pons mantle layer Moderate Single cells euxassay_000022_07
TS23: midbrain mantle layer Moderate Single cells euxassay_000022_07
TS23: trigeminal ganglion Moderate Uniform euxassay_000022_07
TS23: spinal ganglion Strong Single cells euxassay_000022_07
TS23: oral region Strong Regionally restricted euxassay_000022_07 perioral mesenchyme
Specimen euxassay_000022_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: oral cavity Strong Regionally restricted euxassay_000022_08 perioral mesenchyme
TS23: pharynx mesenchyme Strong Regionally restricted euxassay_000022_08
TS23: dorsal root ganglion Moderate Uniform euxassay_000022_08
TS23: ventral grey horn Strong Uniform euxassay_000022_08
TS23: midbrain mantle layer Moderate Single cells euxassay_000022_08
TS23: pons mantle layer Moderate Single cells euxassay_000022_08
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000022_08
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_000022_08
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_000022_08
TS23: medulla oblongata alar plate mantle layer Moderate Single cells euxassay_000022_08
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_08
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_08
TS23: olfactory cortex mantle layer Moderate Single cells euxassay_000022_08
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_000022_08
TS23: nasal capsule Strong Regionally restricted euxassay_000022_08
Specimen euxassay_000022_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: body wall mesenchyme Strong Regionally restricted euxassay_000022_09 pericostal mesenchyme
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_000022_09 stria medullaris
TS23: diencephalon lateral wall Moderate Single cells euxassay_000022_09
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_09
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_09
TS23: olfactory cortex mantle layer Moderate Single cells euxassay_000022_09
TS23: olfactory cortex marginal layer Moderate Single cells euxassay_000022_09
TS23: medulla oblongata alar plate mantle layer Moderate Single cells euxassay_000022_09
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_000022_09
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_000022_09
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000022_09
TS23: pons mantle layer Moderate Single cells euxassay_000022_09
TS23: midbrain mantle layer Moderate Single cells euxassay_000022_09
TS23: ventral grey horn Strong Single cells euxassay_000022_09
TS23: dorsal root ganglion Moderate Uniform euxassay_000022_09
TS23: pharynx mesenchyme Strong Regionally restricted euxassay_000022_09
TS23: nasal capsule Strong Regionally restricted euxassay_000022_09
Specimen euxassay_000022_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: body wall mesenchyme Strong Regionally restricted euxassay_000022_10 pericostal mesenchyme
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_000022_10
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_10
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_10
TS23: olfactory cortex mantle layer Moderate Single cells euxassay_000022_10
TS23: olfactory cortex marginal layer Moderate Single cells euxassay_000022_10
TS23: medulla oblongata alar plate mantle layer Moderate Single cells euxassay_000022_10
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_000022_10
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_000022_10
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000022_10
TS23: pons mantle layer Moderate Single cells euxassay_000022_10
TS23: midbrain mantle layer Moderate Single cells euxassay_000022_10
TS23: ventral grey horn Strong Single cells euxassay_000022_10
TS23: dorsal root ganglion Moderate Uniform euxassay_000022_10
TS23: spinal nerve plexus Strong Single cells euxassay_000022_10
TS23: pharynx Strong Regionally restricted euxassay_000022_10
TS23: nasal capsule Strong Regionally restricted euxassay_000022_10
Specimen euxassay_000022_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: body wall mesenchyme Strong Regionally restricted euxassay_000022_11 pericostal mesenchyme
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_000022_11
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_11
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_11
TS23: 3rd ventricle Strong Regionally restricted euxassay_000022_11 chiasmatic region
TS23: olfactory cortex mantle layer Moderate Single cells euxassay_000022_11
TS23: olfactory cortex marginal layer Moderate Single cells euxassay_000022_11
TS23: medulla oblongata alar plate mantle layer Moderate Single cells euxassay_000022_11
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_000022_11
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_000022_11
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000022_11
TS23: pons mantle layer Moderate Single cells euxassay_000022_11
TS23: midbrain mantle layer Moderate Single cells euxassay_000022_11
TS23: pharynx mesenchyme Moderate Regionally restricted euxassay_000022_11
TS23: ventral grey horn Strong Single cells euxassay_000022_11
TS23: dorsal root ganglion Moderate Uniform euxassay_000022_11
TS23: sensory organ system Strong Regionally restricted euxassay_000022_11
TS23: nasal septum mesenchyme Strong Regionally restricted euxassay_000022_11
Specimen euxassay_000022_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_000022_13
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_13
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_13
TS23: medulla oblongata alar plate mantle layer Moderate Single cells euxassay_000022_13
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_000022_13
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_000022_13
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000022_13
TS23: pons mantle layer Moderate Single cells euxassay_000022_13
TS23: midbrain mantle layer Moderate Single cells euxassay_000022_13
TS23: ventral grey horn Strong Single cells euxassay_000022_13
TS23: pharynx mesenchyme Strong Regionally restricted euxassay_000022_13
TS23: tail vertebral pre-cartilage condensation Strong Regionally restricted euxassay_000022_13
Specimen euxassay_000022_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: body wall mesenchyme Strong Regionally restricted euxassay_000022_15 pericostal mesenchyme
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_000022_15
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_15
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_15
TS23: midbrain mantle layer Moderate Single cells euxassay_000022_15
TS23: dorsal root ganglion Moderate Uniform euxassay_000022_15
TS23: nasal capsule Strong Regionally restricted euxassay_000022_15
TS23: ventral grey horn Strong Single cells euxassay_000022_15
TS23: pharynx mesenchyme Moderate Regionally restricted euxassay_000022_15
TS23: tail vertebral pre-cartilage condensation Strong Regionally restricted euxassay_000022_15
Specimen euxassay_000022_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: body wall mesenchyme Strong Regionally restricted euxassay_000022_16 pericostal mesenchyme
TS23: diencephalon lateral wall mantle layer Moderate Single cells euxassay_000022_16
TS23: cerebral cortex mantle layer Strong Uniform euxassay_000022_16
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_16
TS23: lentiform nucleus Moderate Regionally restricted euxassay_000022_16
TS23: medulla oblongata alar plate mantle layer Moderate Single cells euxassay_000022_16
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_000022_16
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_000022_16
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000022_16
TS23: pons mantle layer Moderate Single cells euxassay_000022_16
TS23: trigeminal ganglion Moderate Uniform euxassay_000022_16
TS23: dorsal root ganglion Moderate Uniform euxassay_000022_16
TS23: ventral grey horn Strong Single cells euxassay_000022_16
TS23: pharynx mesenchyme Strong Regionally restricted euxassay_000022_16
TS23: oral region Strong Regionally restricted euxassay_000022_16 perioral mesenchyme
TS23: tail vertebral pre-cartilage condensation Strong Regionally restricted euxassay_000022_16
Specimen euxassay_000022_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_000022_17
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_000022_17
TS23: metencephalon rest of alar plate mantle layer Moderate Single cells euxassay_000022_17
TS23: midbrain-hindbrain junction Present Regionally restricted euxassay_000022_17 isthmic nuclei
TS23: cerebral cortex marginal layer Strong Uniform euxassay_000022_17
TS23: body wall mesenchyme Strong Regionally restricted euxassay_000022_17 pericostal mesenchyme
TS23: trigeminal ganglion Moderate Uniform euxassay_000022_17
TS23: dorsal root ganglion Moderate Uniform euxassay_000022_17 strong expression of single cells
TS23: pharynx mesenchyme Moderate Regionally restricted euxassay_000022_17
TS23: tail vertebral pre-cartilage condensation Strong Regionally restricted euxassay_000022_17
TS23: oral region Strong Regionally restricted euxassay_000022_17 mesenchyme
Specimen euxassay_000022_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: interdigital region between hindlimb digits 1 and 2 mesenchyme Strong Regionally restricted euxassay_000022_19
TS23: interdigital region between hindlimb digits 2 and 3 mesenchyme Strong Regionally restricted euxassay_000022_19
TS23: interdigital region between hindlimb digits 3 and 4 mesenchyme Strong Regionally restricted euxassay_000022_19
TS23: interdigital region between hindlimb digits 4 and 5 mesenchyme Strong Regionally restricted euxassay_000022_19
TS23: hindlimb digit 2 Strong Regionally restricted euxassay_000022_19
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_000022_19 joint primordium
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_000022_19 joint primordium
TS23: head mesenchyme Moderate Regionally restricted euxassay_000022_19 perioral mesenchyme
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_000022_19
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_000022_19
TS23: trigeminal ganglion Weak Uniform euxassay_000022_19
Specimen euxassay_000022_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: interdigital region between hindlimb digits 1 and 2 mesenchyme Moderate Regionally restricted euxassay_000022_20
TS23: interdigital region between hindlimb digits 2 and 3 mesenchyme Moderate Regionally restricted euxassay_000022_20
TS23: interdigital region between hindlimb digits 3 and 4 mesenchyme Moderate Regionally restricted euxassay_000022_20
TS23: interdigital region between hindlimb digits 4 and 5 mesenchyme Moderate Regionally restricted euxassay_000022_20
TS23: head mesenchyme Strong Regionally restricted euxassay_000022_20
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_000022_20
TS23: rest of cerebellum mantle layer Strong Uniform euxassay_000022_20
Specimen euxassay_000022_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: head mesenchyme Strong Regionally restricted euxassay_000022_21
TS23: perioptic mesenchyme Present euxassay_000022_21
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_000022_21
TS23: trigeminal ganglion Strong Uniform euxassay_000022_21
Specimen euxassay_000022_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: naso-lacrimal duct Strong Uniform euxassay_000022_22
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_000022_22
TS23: interdigital region between forelimb digits 1 and 2 mesenchyme Moderate Uniform euxassay_000022_22
TS23: knee rest of mesenchyme Moderate Uniform euxassay_000022_22
Specimen euxassay_000022_23: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_000022_23
TS23: cortical plate Present euxassay_000022_23
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory