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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825923
Gene symbol: Lig1
Gene name: ligase I, DNA, ATP-dependent
Probe: T31302
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_012425_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_012425_03
Specimen euxassay_012425_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_012425_04
Specimen euxassay_012425_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Uniform euxassay_012425_05
TS23: metencephalon rest of alar plate marginal layer Moderate Regionally restricted euxassay_012425_05
Specimen euxassay_012425_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_06
TS23: metencephalon rest of alar plate marginal layer Moderate Regionally restricted euxassay_012425_06
Specimen euxassay_012425_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_07
TS23: metencephalon rest of alar plate marginal layer Weak Regionally restricted euxassay_012425_07
Specimen euxassay_012425_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_08
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_012425_08
TS23: metencephalon rest of alar plate marginal layer Weak Regionally restricted euxassay_012425_08
Specimen euxassay_012425_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_09
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_012425_09
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_012425_09
TS23: inferior colliculus Present euxassay_012425_09
TS23: metencephalon rest of alar plate marginal layer Moderate Regionally restricted euxassay_012425_09
Specimen euxassay_012425_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_10
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_012425_10
TS23: inferior colliculus Present euxassay_012425_10
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_012425_10
TS23: metencephalon rest of alar plate marginal layer Weak Regionally restricted euxassay_012425_10
TS23: thymus primordium Moderate Regionally restricted euxassay_012425_10
Specimen euxassay_012425_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012425_11
TS23: inferior colliculus Present euxassay_012425_11
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_012425_11
TS23: metencephalon rest of alar plate marginal layer Weak Regionally restricted euxassay_012425_11
TS23: thymus primordium Moderate Regionally restricted euxassay_012425_11
Specimen euxassay_012425_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_012425_12
TS23: inferior colliculus Present euxassay_012425_12
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_012425_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_012425_12
TS23: metencephalon rest of alar plate marginal layer Weak Regionally restricted euxassay_012425_12
TS23: thymus primordium Moderate Regionally restricted euxassay_012425_12
Specimen euxassay_012425_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_012425_13
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_13
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_012425_13
TS23: inferior colliculus Present euxassay_012425_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_012425_13
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_012425_13
TS23: metencephalon rest of alar plate marginal layer Weak Regionally restricted euxassay_012425_13
TS23: thymus primordium Moderate Regionally restricted euxassay_012425_13
Specimen euxassay_012425_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_14
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_012425_14
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_012425_14
TS23: inferior colliculus Present euxassay_012425_14
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_012425_14
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_012425_14
TS23: thymus primordium Moderate Regionally restricted euxassay_012425_14
Specimen euxassay_012425_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012425_15
TS23: inferior colliculus Present euxassay_012425_15
TS23: metencephalon rest of alar plate marginal layer Weak Regionally restricted euxassay_012425_15
Specimen euxassay_012425_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_16
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012425_16
TS23: inferior colliculus Present euxassay_012425_16
TS23: metencephalon rest of alar plate marginal layer Weak Regionally restricted euxassay_012425_16
Specimen euxassay_012425_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_17
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012425_17
TS23: inferior colliculus Present euxassay_012425_17
TS23: metencephalon rest of alar plate marginal layer Moderate Regionally restricted euxassay_012425_17
Specimen euxassay_012425_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_18
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_012425_18
TS23: inferior colliculus Present euxassay_012425_18
TS23: metencephalon rest of alar plate marginal layer Moderate Regionally restricted euxassay_012425_18
Specimen euxassay_012425_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_19
TS23: metencephalon rest of alar plate marginal layer Moderate Regionally restricted euxassay_012425_19
Specimen euxassay_012425_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_20
TS23: metencephalon rest of alar plate marginal layer Moderate Regionally restricted euxassay_012425_20
Specimen euxassay_012425_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012425_21
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory