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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825622
Gene symbol: Irx1
Gene name: Iroquois homeobox 1
Probe: T55088
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019640_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_019640_01
TS23: forelimb digit 2 mesenchyme Strong Regionally restricted euxassay_019640_01
Specimen euxassay_019640_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_019640_02
TS23: forelimb digit 2 mesenchyme Strong Regionally restricted euxassay_019640_02
TS23: forelimb digit 1 mesenchyme Strong Regionally restricted euxassay_019640_02
Specimen euxassay_019640_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_03
TS23: epidermis Strong Regionally restricted euxassay_019640_03
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_019640_03
TS23: forelimb digit 2 mesenchyme Strong Regionally restricted euxassay_019640_03
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019640_03
Specimen euxassay_019640_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_04
TS23: vibrissa Weak Regionally restricted euxassay_019640_04
TS23: epidermis Strong Regionally restricted euxassay_019640_04
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_019640_04
TS23: forelimb digit 2 mesenchyme Strong Regionally restricted euxassay_019640_04
TS23: forelimb digit 1 mesenchyme Strong Regionally restricted euxassay_019640_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019640_04
Specimen euxassay_019640_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_05
TS23: vibrissa Moderate Regionally restricted euxassay_019640_05
TS23: epidermis Strong Regionally restricted euxassay_019640_05
TS23: extrinsic ocular muscle Strong Regionally restricted euxassay_019640_05
TS23: saccule Strong Regionally restricted euxassay_019640_05
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019640_05
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_019640_05
Specimen euxassay_019640_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_06
TS23: vibrissa Moderate Regionally restricted euxassay_019640_06
TS23: epidermis Strong Regionally restricted euxassay_019640_06
TS23: extrinsic ocular muscle Strong Regionally restricted euxassay_019640_06
TS23: saccule Strong Regionally restricted euxassay_019640_06
TS23: hindlimb digit 5 metatarsal Strong Regionally restricted euxassay_019640_06
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_019640_06
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019640_06
TS23: hindlimb digit 4 metatarsal Strong Regionally restricted euxassay_019640_06
TS23: hindlimb digit 3 metatarsal Strong Regionally restricted euxassay_019640_06
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019640_06
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_019640_06
TS23: hindlimb digit 2 metatarsal Strong Regionally restricted euxassay_019640_06
TS23: hindlimb digit 1 metatarsal Strong Regionally restricted euxassay_019640_06
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_019640_06
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019640_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019640_06
Specimen euxassay_019640_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_07
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019640_07
TS23: vibrissa Moderate Regionally restricted euxassay_019640_07
TS23: epidermis Strong Regionally restricted euxassay_019640_07
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_019640_07
TS23: upper jaw molar Strong Regionally restricted euxassay_019640_07
TS23: saccule Strong Regionally restricted euxassay_019640_07
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_019640_07
TS23: hindlimb digit 5 metatarsal Strong Regionally restricted euxassay_019640_07
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019640_07
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019640_07
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019640_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019640_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_019640_07
Specimen euxassay_019640_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_08
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019640_08
TS23: vibrissa Weak Regionally restricted euxassay_019640_08
TS23: epidermis Strong Regionally restricted euxassay_019640_08
TS23: lower jaw molar Moderate Regionally restricted euxassay_019640_08
TS23: saccule Strong Regionally restricted euxassay_019640_08
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_019640_08
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019640_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_019640_08
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019640_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_019640_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019640_08
Specimen euxassay_019640_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_09
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019640_09
TS23: epidermis Strong Regionally restricted euxassay_019640_09
TS23: metanephros Strong Regionally restricted euxassay_019640_09
TS23: saccule Moderate Regionally restricted euxassay_019640_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019640_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019640_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019640_09
Specimen euxassay_019640_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_10
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019640_10
TS23: epidermis Strong Regionally restricted euxassay_019640_10
TS23: ventral grey horn Strong Single cells euxassay_019640_10
TS23: metanephros Strong Regionally restricted euxassay_019640_10
TS23: saccule Moderate Regionally restricted euxassay_019640_10
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019640_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_019640_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019640_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019640_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019640_10
Specimen euxassay_019640_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_11
TS23: epidermis Strong Regionally restricted euxassay_019640_11
TS23: ventral grey horn Strong Single cells euxassay_019640_11
TS23: metanephros Strong Regionally restricted euxassay_019640_11
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019640_11
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_019640_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_019640_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019640_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019640_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019640_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_019640_11
TS23: heart ventricle Weak Regionally restricted euxassay_019640_11
Specimen euxassay_019640_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_12
TS23: epidermis Strong Regionally restricted euxassay_019640_12
TS23: upper jaw incisor Moderate Regionally restricted euxassay_019640_12
TS23: lower jaw incisor Moderate Regionally restricted euxassay_019640_12
TS23: ventral grey horn Strong Single cells euxassay_019640_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_019640_12
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019640_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019640_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_019640_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019640_12
TS23: heart ventricle Weak Regionally restricted euxassay_019640_12
Specimen euxassay_019640_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_13
TS23: epidermis Strong Regionally restricted euxassay_019640_13
TS23: upper jaw incisor Strong Regionally restricted euxassay_019640_13
TS23: lower jaw incisor Strong Regionally restricted euxassay_019640_13
TS23: larynx Strong Regionally restricted euxassay_019640_13
TS23: trachea Moderate Regionally restricted euxassay_019640_13
TS23: ventral grey horn Strong Single cells euxassay_019640_13
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019640_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_019640_13
TS23: pons mantle layer Strong Regionally restricted euxassay_019640_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019640_13
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019640_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_019640_13
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019640_13
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019640_13
TS23: heart ventricle Weak Regionally restricted euxassay_019640_13
Specimen euxassay_019640_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_14
TS23: epidermis Strong Regionally restricted euxassay_019640_14
TS23: upper jaw incisor Strong Regionally restricted euxassay_019640_14
TS23: larynx Moderate Regionally restricted euxassay_019640_14
TS23: trachea Moderate Regionally restricted euxassay_019640_14
TS23: ventral grey horn Strong Single cells euxassay_019640_14
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019640_14
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019640_14
TS23: pons mantle layer Strong Regionally restricted euxassay_019640_14
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019640_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019640_14
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_019640_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019640_14
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019640_14
TS23: heart ventricle Weak Regionally restricted euxassay_019640_14
Specimen euxassay_019640_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_15
TS23: epidermis Strong Regionally restricted euxassay_019640_15
TS23: ventral grey horn Strong Single cells euxassay_019640_15
TS23: pons mantle layer Strong Regionally restricted euxassay_019640_15
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019640_15
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019640_15
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019640_15
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019640_15
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019640_15
TS23: heart ventricle Weak Regionally restricted euxassay_019640_15
TS23: urethra Weak Regionally restricted euxassay_019640_15 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
Specimen euxassay_019640_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_16
TS23: epidermis Strong Regionally restricted euxassay_019640_16
TS23: upper jaw incisor Strong Regionally restricted euxassay_019640_16
TS23: lower jaw incisor Strong Regionally restricted euxassay_019640_16
TS23: ventral grey horn Strong Single cells euxassay_019640_16
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019640_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_019640_16
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019640_16
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019640_16
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019640_16
TS23: heart ventricle Weak Regionally restricted euxassay_019640_16
TS23: urethra Weak Regionally restricted euxassay_019640_16 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
Specimen euxassay_019640_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_17
TS23: epidermis Strong Regionally restricted euxassay_019640_17
TS23: upper jaw incisor Strong Regionally restricted euxassay_019640_17
TS23: lower jaw incisor Strong Regionally restricted euxassay_019640_17
TS23: ventral grey horn Strong Single cells euxassay_019640_17
TS23: saccule Strong Regionally restricted euxassay_019640_17
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019640_17
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019640_17
TS23: pons mantle layer Strong Regionally restricted euxassay_019640_17
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019640_17
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019640_17
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019640_17
TS23: pancreas Moderate Regionally restricted euxassay_019640_17
Specimen euxassay_019640_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_18
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019640_18
TS23: epidermis Strong Regionally restricted euxassay_019640_18
TS23: upper jaw incisor Strong Regionally restricted euxassay_019640_18
TS23: lower jaw incisor Strong Regionally restricted euxassay_019640_18
TS23: saccule Strong Regionally restricted euxassay_019640_18
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019640_18
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019640_18
TS23: pons mantle layer Strong Regionally restricted euxassay_019640_18
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019640_18
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019640_18
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019640_18
TS23: pancreas Strong Regionally restricted euxassay_019640_18
Specimen euxassay_019640_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_19
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019640_19
TS23: epidermis Strong Regionally restricted euxassay_019640_19
TS23: metanephros Strong Regionally restricted euxassay_019640_19
TS23: saccule Strong Regionally restricted euxassay_019640_19
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019640_19
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_019640_19
TS23: pons mantle layer Strong Regionally restricted euxassay_019640_19
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019640_19
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019640_19
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_019640_19
TS23: pancreas Moderate Regionally restricted euxassay_019640_19
Specimen euxassay_019640_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_20
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019640_20
TS23: epidermis Strong Regionally restricted euxassay_019640_20
TS23: metanephros Strong Regionally restricted euxassay_019640_20
TS23: saccule Strong Regionally restricted euxassay_019640_20
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019640_20
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_019640_20
TS23: pons mantle layer Moderate Regionally restricted euxassay_019640_20
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_019640_20
TS23: midbrain mantle layer Strong Regionally restricted euxassay_019640_20
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019640_20
Specimen euxassay_019640_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_21
TS23: submandibular gland primordium Strong Regionally restricted euxassay_019640_21
TS23: epidermis Strong Regionally restricted euxassay_019640_21
TS23: extrinsic ocular muscle Weak Regionally restricted euxassay_019640_21
TS23: lower jaw molar Strong Regionally restricted euxassay_019640_21
TS23: metanephros Strong Regionally restricted euxassay_019640_21
TS23: saccule Strong Regionally restricted euxassay_019640_21
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_019640_21
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019640_21
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019640_21
Specimen euxassay_019640_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_22
TS23: epidermis Strong Regionally restricted euxassay_019640_22
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_019640_22
TS23: upper jaw molar Strong Regionally restricted euxassay_019640_22
TS23: saccule Strong Regionally restricted euxassay_019640_22
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019640_22
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_019640_22
Specimen euxassay_019640_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_23
TS23: vibrissa Weak Regionally restricted euxassay_019640_23
TS23: epidermis Strong Regionally restricted euxassay_019640_23
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_019640_23
TS23: upper jaw molar Strong Regionally restricted euxassay_019640_23
TS23: saccule Moderate Regionally restricted euxassay_019640_23
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019640_23
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019640_23
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_019640_23
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019640_23
Specimen euxassay_019640_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019640_24
TS23: vibrissa Weak Regionally restricted euxassay_019640_24
TS23: epidermis Strong Regionally restricted euxassay_019640_24
TS23: extrinsic ocular muscle Moderate Regionally restricted euxassay_019640_24
TS23: hindlimb digit 1 metatarsal Strong Regionally restricted euxassay_019640_24
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_019640_24
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_019640_24
TS23: hindlimb digit 2 metatarsal Strong Regionally restricted euxassay_019640_24
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_019640_24
TS23: hindlimb digit 3 metatarsal Strong Regionally restricted euxassay_019640_24
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_019640_24
TS23: hindlimb digit 4 metatarsal Strong Regionally restricted euxassay_019640_24
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_019640_24
TS23: hindlimb digit 5 metatarsal Strong Regionally restricted euxassay_019640_24
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019640_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory