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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825619
Gene symbol: Irf6
Gene name: interferon regulatory factor 6
Probe: IMAGE clone 2780468
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_003276_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_003276_01
TS23: epidermis Strong Regionally restricted euxassay_003276_01
Specimen euxassay_003276_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003276_02
TS23: epidermis Strong Regionally restricted euxassay_003276_02
Specimen euxassay_003276_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003276_03
TS23: epidermis Strong Regionally restricted euxassay_003276_03
TS23: stomach Strong Regionally restricted euxassay_003276_03
Specimen euxassay_003276_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003276_04
TS23: epidermis Strong Regionally restricted euxassay_003276_04
TS23: stomach Strong Regionally restricted euxassay_003276_04
Specimen euxassay_003276_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003276_05
TS23: epidermis Strong Regionally restricted euxassay_003276_05
TS23: vibrissa Moderate Regionally restricted euxassay_003276_05
TS23: stomach Strong Regionally restricted euxassay_003276_05
Specimen euxassay_003276_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003276_06
TS23: epidermis Strong Regionally restricted euxassay_003276_06
TS23: vibrissa Strong Regionally restricted euxassay_003276_06
TS23: stomach Strong Regionally restricted euxassay_003276_06
Specimen euxassay_003276_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003276_07
TS23: vibrissa Strong Regionally restricted euxassay_003276_07
TS23: epidermis Strong Regionally restricted euxassay_003276_07
TS23: stomach Strong Regionally restricted euxassay_003276_07
TS23: oral epithelium Moderate Regionally restricted euxassay_003276_07
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_003276_07
Specimen euxassay_003276_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_08
TS23: vibrissa Strong Regionally restricted euxassay_003276_08
TS23: stomach Weak Regionally restricted euxassay_003276_08
TS23: upper jaw molar Strong Regionally restricted euxassay_003276_08
TS23: lower jaw molar Strong Regionally restricted euxassay_003276_08
TS23: oral epithelium Moderate Regionally restricted euxassay_003276_08
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_003276_08
Specimen euxassay_003276_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_09
TS23: vibrissa Strong Regionally restricted euxassay_003276_09
TS23: stomach Weak Regionally restricted euxassay_003276_09
TS23: lower jaw molar Strong Regionally restricted euxassay_003276_09
TS23: oral epithelium Strong Regionally restricted euxassay_003276_09
TS23: upper jaw molar Strong Regionally restricted euxassay_003276_09
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_003276_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003276_09
Specimen euxassay_003276_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_10
TS23: vibrissa Strong Regionally restricted euxassay_003276_10
TS23: midgut Moderate Regionally restricted euxassay_003276_10
TS23: oral epithelium Strong Regionally restricted euxassay_003276_10
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_003276_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003276_10
Specimen euxassay_003276_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_11
TS23: midgut Moderate Regionally restricted euxassay_003276_11
TS23: oral epithelium Moderate Regionally restricted euxassay_003276_11
TS23: lower jaw incisor Strong Regionally restricted euxassay_003276_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003276_11
Specimen euxassay_003276_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_12
TS23: midgut Moderate Regionally restricted euxassay_003276_12
TS23: lower jaw incisor Strong Regionally restricted euxassay_003276_12
TS23: upper jaw incisor Strong Regionally restricted euxassay_003276_12
TS23: oral epithelium Moderate Regionally restricted euxassay_003276_12
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003276_12
TS23: thyroid cartilage Moderate Regionally restricted euxassay_003276_12
Specimen euxassay_003276_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_13
TS23: midgut Moderate Regionally restricted euxassay_003276_13
TS23: rectum Moderate Regionally restricted euxassay_003276_13
TS23: lower jaw incisor Strong Regionally restricted euxassay_003276_13
TS23: upper jaw incisor Strong Regionally restricted euxassay_003276_13
TS23: oral epithelium Strong Regionally restricted euxassay_003276_13
TS23: naris Weak Regionally restricted euxassay_003276_13
TS23: bladder Strong Regionally restricted euxassay_003276_13
TS23: urethra Strong Regionally restricted euxassay_003276_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: esophagus Moderate Regionally restricted euxassay_003276_13
TS23: thyroid cartilage Moderate Regionally restricted euxassay_003276_13
Specimen euxassay_003276_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_14
TS23: hindgut Moderate Regionally restricted euxassay_003276_14
TS23: midgut Moderate Regionally restricted euxassay_003276_14
TS23: oral epithelium Strong Regionally restricted euxassay_003276_14
TS23: naris Weak Regionally restricted euxassay_003276_14
TS23: bladder Strong Regionally restricted euxassay_003276_14
TS23: urethra Strong Regionally restricted euxassay_003276_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: esophagus Moderate Regionally restricted euxassay_003276_14
TS23: thyroid cartilage Moderate Regionally restricted euxassay_003276_14
TS23: trachea Moderate Regionally restricted euxassay_003276_14
Specimen euxassay_003276_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_15
TS23: midgut Moderate Regionally restricted euxassay_003276_15
TS23: hindgut Moderate Regionally restricted euxassay_003276_15
TS23: foregut-midgut junction Moderate Regionally restricted euxassay_003276_15
TS23: oral epithelium Strong Regionally restricted euxassay_003276_15
TS23: olfactory epithelium Weak Regionally restricted euxassay_003276_15
TS23: bladder Strong Regionally restricted euxassay_003276_15
Specimen euxassay_003276_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_16
TS23: foregut-midgut junction Moderate Regionally restricted euxassay_003276_16
TS23: midgut Moderate Regionally restricted euxassay_003276_16
TS23: lower jaw incisor Strong Regionally restricted euxassay_003276_16
TS23: upper jaw incisor Strong Regionally restricted euxassay_003276_16
TS23: oral epithelium Moderate Regionally restricted euxassay_003276_16
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003276_16
TS23: naris Moderate Regionally restricted euxassay_003276_16
Specimen euxassay_003276_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_17
TS23: midgut Moderate Regionally restricted euxassay_003276_17
TS23: oral epithelium Moderate Regionally restricted euxassay_003276_17
TS23: lower jaw incisor Moderate Regionally restricted euxassay_003276_17
TS23: upper jaw incisor Moderate Regionally restricted euxassay_003276_17
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_003276_17
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003276_17
TS23: naris Moderate Regionally restricted euxassay_003276_17
TS23: renal calyx Moderate Regionally restricted euxassay_003276_17
Specimen euxassay_003276_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_18
TS23: oral epithelium Moderate Regionally restricted euxassay_003276_18
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_003276_18
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003276_18
TS23: renal pelvis Moderate Regionally restricted euxassay_003276_18
Specimen euxassay_003276_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_19
TS23: lower jaw molar Strong Regionally restricted euxassay_003276_19
TS23: upper jaw molar Strong Regionally restricted euxassay_003276_19
TS23: oral epithelium Moderate Regionally restricted euxassay_003276_19
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_003276_19
TS23: olfactory epithelium Moderate Regionally restricted euxassay_003276_19
TS23: renal calyx Moderate Regionally restricted euxassay_003276_19
Specimen euxassay_003276_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_003276_20
TS23: epidermis Strong Regionally restricted euxassay_003276_20
TS23: oral epithelium Strong Regionally restricted euxassay_003276_20
TS23: lower jaw molar Strong Regionally restricted euxassay_003276_20
TS23: upper jaw molar Strong Regionally restricted euxassay_003276_20
TS23: submandibular gland primordium Strong Regionally restricted euxassay_003276_20
TS23: olfactory epithelium Strong Regionally restricted euxassay_003276_20
Specimen euxassay_003276_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_21
TS23: vibrissa Moderate Regionally restricted euxassay_003276_21
TS23: oral epithelium Moderate Regionally restricted euxassay_003276_21
Specimen euxassay_003276_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_003276_22
TS23: vibrissa Moderate Regionally restricted euxassay_003276_22
TS23: oral epithelium Moderate Regionally restricted euxassay_003276_22
Specimen euxassay_003276_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003276_23
TS23: epidermis Strong Regionally restricted euxassay_003276_23
TS23: vibrissa Moderate Regionally restricted euxassay_003276_23
Specimen euxassay_003276_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pharyngo-tympanic tube Moderate Regionally restricted euxassay_003276_24
TS23: epidermis Strong Regionally restricted euxassay_003276_24
TS23: vibrissa Moderate Regionally restricted euxassay_003276_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory