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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825550
Gene symbol: Ihh
Gene name: Indian hedgehog
Probe: IMAGE clone 465405
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_000385_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindlimb digit 1 phalanx Weak Regionally restricted euxassay_000385_01
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_000385_01
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_000385_01
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_000385_01
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_000385_01
TS23: neural retina Weak Regionally restricted euxassay_000385_01
Specimen euxassay_000385_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: orbito-sphenoid Weak Regionally restricted euxassay_000385_02
TS23: neural retina Weak Regionally restricted euxassay_000385_02
TS23: femur Weak Regionally restricted euxassay_000385_02
Specimen euxassay_000385_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_000385_03
TS23: rib Weak Regionally restricted euxassay_000385_03
TS23: mandible Moderate Regionally restricted euxassay_000385_03
TS23: maxilla Moderate Regionally restricted euxassay_000385_03
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_000385_03
TS23: femur Weak Regionally restricted euxassay_000385_03
Specimen euxassay_000385_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_000385_04
TS23: rib Weak Regionally restricted euxassay_000385_04
TS23: maxilla Moderate Regionally restricted euxassay_000385_04
TS23: mandible Moderate Regionally restricted euxassay_000385_04
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_000385_04
Specimen euxassay_000385_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_000385_05
TS23: rib Weak Regionally restricted euxassay_000385_05
Specimen euxassay_000385_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_000385_06
TS23: rib Weak Regionally restricted euxassay_000385_06
TS23: lung Weak Regionally restricted euxassay_000385_06
Specimen euxassay_000385_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_000385_07
TS23: midgut Strong Regionally restricted euxassay_000385_07
TS23: rib Weak Regionally restricted euxassay_000385_07
TS23: maxilla Moderate Regionally restricted euxassay_000385_07
TS23: mandible Moderate Regionally restricted euxassay_000385_07
TS23: lung Weak Regionally restricted euxassay_000385_07
Specimen euxassay_000385_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_000385_08
TS23: clavicle Weak Regionally restricted euxassay_000385_08
Specimen euxassay_000385_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_000385_09
TS23: lung Weak Regionally restricted euxassay_000385_09
TS23: clavicle Strong Regionally restricted euxassay_000385_09
Specimen euxassay_000385_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_000385_10
TS23: rectum Strong Regionally restricted euxassay_000385_10
TS23: bladder Weak Regionally restricted euxassay_000385_10
TS23: urethra Weak Regionally restricted euxassay_000385_10 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: lung Weak Regionally restricted euxassay_000385_10
Specimen euxassay_000385_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_000385_11
TS23: bladder Weak Regionally restricted euxassay_000385_11
TS23: urethra Weak Regionally restricted euxassay_000385_11 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-sex specific term.
TS23: lung Weak Regionally restricted euxassay_000385_11
Specimen euxassay_000385_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_000385_12
Specimen euxassay_000385_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_000385_13
Specimen euxassay_000385_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_000385_14
TS23: lung Weak Regionally restricted euxassay_000385_14
Specimen euxassay_000385_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_000385_15
TS23: maxilla Moderate Regionally restricted euxassay_000385_15
TS23: mandible Moderate Regionally restricted euxassay_000385_15
TS23: lung Weak Regionally restricted euxassay_000385_15
TS23: clavicle Moderate Regionally restricted euxassay_000385_15
Specimen euxassay_000385_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Weak Regionally restricted euxassay_000385_16
TS23: lung Weak Regionally restricted euxassay_000385_16
TS23: clavicle Moderate Regionally restricted euxassay_000385_16
Specimen euxassay_000385_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Weak Regionally restricted euxassay_000385_17
Specimen euxassay_000385_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_000385_18
TS23: maxilla Weak Regionally restricted euxassay_000385_18
TS23: mandible Weak Regionally restricted euxassay_000385_18
TS23: lung Weak Regionally restricted euxassay_000385_18
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_000385_18
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_000385_18
Specimen euxassay_000385_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_000385_19
TS23: maxilla Moderate Regionally restricted euxassay_000385_19
TS23: mandible Moderate Regionally restricted euxassay_000385_19
TS23: orbito-sphenoid Weak Regionally restricted euxassay_000385_19
TS23: lung Moderate Regionally restricted euxassay_000385_19
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_000385_19
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_000385_19
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_000385_19
TS23: femur Weak Regionally restricted euxassay_000385_19
Specimen euxassay_000385_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_000385_20
TS23: orbito-sphenoid Weak Regionally restricted euxassay_000385_20
TS23: hindlimb digit 1 metatarsal Weak Regionally restricted euxassay_000385_20
TS23: hindlimb digit 2 metatarsal Weak Regionally restricted euxassay_000385_20
TS23: hindlimb digit 3 metatarsal Weak Regionally restricted euxassay_000385_20
TS23: hindlimb digit 4 metatarsal Weak Regionally restricted euxassay_000385_20
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_000385_20
Specimen euxassay_000385_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Weak Regionally restricted euxassay_000385_21
TS23: orbito-sphenoid Weak Regionally restricted euxassay_000385_21
TS23: neural retina Weak Regionally restricted euxassay_000385_21
Specimen euxassay_000385_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_000385_22
TS23: orbito-sphenoid Weak Regionally restricted euxassay_000385_22
TS23: neural retina Weak Regionally restricted euxassay_000385_22
TS23: fibula Weak Regionally restricted euxassay_000385_22
TS23: tibia Weak Regionally restricted euxassay_000385_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory