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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825546
Gene symbol: Igsf21
Gene name: immunoglobulin superfamily, member 21
Probe: MGC clone 67646
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen 6C - BC055811: embryonic day 14.5 (more )
Note: The probe used to generate this specimen was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: thalamus Strong Non-Uniform 6C BC055811 left , 6C composite , 6C BC055811 right There is strong expression in the caudal pole (close to the retroflexus tract); expression levels become weaker towards the anterior pole.
Specimen euxassay_006157_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: retina Moderate Regionally restricted euxassay_006157_01
TS23: cerebral cortex marginal layer Moderate Regionally restricted euxassay_006157_01
Specimen euxassay_006157_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: retina Weak Regionally restricted euxassay_006157_02
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_02
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_02
Specimen euxassay_006157_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: retina Weak Regionally restricted euxassay_006157_03
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006157_03
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_03
TS23: corpus striatum Moderate Regionally restricted euxassay_006157_03
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_03
Specimen euxassay_006157_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: retina Weak Regionally restricted euxassay_006157_04
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006157_04
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_04
TS23: corpus striatum Moderate Regionally restricted euxassay_006157_04
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_04
TS23: pons mantle layer Strong Regionally restricted euxassay_006157_04
Specimen euxassay_006157_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006157_05
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006157_05
TS23: dorsal root ganglion Weak Regionally restricted euxassay_006157_05
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_05
TS23: corpus striatum Moderate Regionally restricted euxassay_006157_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006157_05
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_006157_05
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006157_05
Specimen euxassay_006157_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006157_06
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006157_06
TS23: dorsal root ganglion Weak Regionally restricted euxassay_006157_06
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_06
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006157_06
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_006157_06
TS23: corpus striatum Moderate Regionally restricted euxassay_006157_06
TS23: midbrain mantle layer Moderate Graded euxassay_006157_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_006157_06
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_06
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_006157_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006157_06
Specimen euxassay_006157_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006157_07
TS23: dorsal root ganglion Weak Regionally restricted euxassay_006157_07
TS23: cervical ganglion Weak Regionally restricted euxassay_006157_07
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_07
TS23: corpus striatum Weak Regionally restricted euxassay_006157_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006157_07
TS23: midbrain mantle layer Moderate Graded euxassay_006157_07
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_006157_07
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_006157_07
Specimen euxassay_006157_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006157_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006157_08
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_006157_08
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_08
TS23: corpus striatum Moderate Regionally restricted euxassay_006157_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006157_08
TS23: midbrain mantle layer Moderate Graded euxassay_006157_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_006157_08
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006157_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006157_08
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_006157_08
Specimen euxassay_006157_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_006157_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006157_09
TS23: thoracic ganglion Weak Regionally restricted euxassay_006157_09
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_09
TS23: corpus striatum Moderate Regionally restricted euxassay_006157_09
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_006157_09
TS23: thalamus mantle layer Strong Regionally restricted euxassay_006157_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006157_09
TS23: midbrain mantle layer Moderate Graded euxassay_006157_09
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_006157_09
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_006157_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006157_09
Specimen euxassay_006157_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_006157_10
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006157_10
TS23: cerebral cortex marginal layer Moderate Regionally restricted euxassay_006157_10
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_006157_10
TS23: corpus striatum Moderate Regionally restricted euxassay_006157_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006157_10
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_006157_10
TS23: thalamus mantle layer Strong Regionally restricted euxassay_006157_10
TS23: midbrain mantle layer Strong Graded euxassay_006157_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_006157_10
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006157_10
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_006157_10
Specimen euxassay_006157_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_006157_11
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006157_11
TS23: cerebral cortex marginal layer Moderate Regionally restricted euxassay_006157_11
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_006157_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006157_11
TS23: thalamus mantle layer Strong Regionally restricted euxassay_006157_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006157_11
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_006157_11
TS23: midbrain mantle layer Strong Graded euxassay_006157_11
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_006157_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006157_11
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_006157_11
Specimen euxassay_006157_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006157_12
TS23: thoracic ganglion Weak Regionally restricted euxassay_006157_12
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_006157_12
TS23: cerebral cortex marginal layer Moderate Regionally restricted euxassay_006157_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006157_12
TS23: thalamus mantle layer Strong Regionally restricted euxassay_006157_12
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_006157_12
TS23: midbrain mantle layer Strong Graded euxassay_006157_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_006157_12
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_12
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_006157_12
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_006157_12
Specimen euxassay_006157_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006157_13
TS23: thoracic ganglion Weak Regionally restricted euxassay_006157_13
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_006157_13
TS23: cerebral cortex marginal layer Moderate Regionally restricted euxassay_006157_13
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006157_13
TS23: thalamus mantle layer Moderate Regionally restricted euxassay_006157_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006157_13
TS23: midbrain mantle layer Moderate Graded euxassay_006157_13
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_13
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_006157_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006157_13
Specimen euxassay_006157_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006157_14
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_006157_14
TS23: cerebral cortex marginal layer Moderate Regionally restricted euxassay_006157_14
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006157_14
TS23: thalamus mantle layer Strong Regionally restricted euxassay_006157_14
TS23: diencephalon lateral wall mantle layer Moderate Spotted euxassay_006157_14
TS23: hypothalamus mantle layer Moderate Spotted euxassay_006157_14
TS23: midbrain mantle layer Moderate Graded euxassay_006157_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_006157_14
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006157_14
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_006157_14
Specimen euxassay_006157_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cervical ganglion Moderate Regionally restricted euxassay_006157_15
TS23: cerebral cortex marginal layer Moderate Regionally restricted euxassay_006157_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006157_15
TS23: hypothalamus mantle layer Moderate Spotted euxassay_006157_15
TS23: diencephalon lateral wall mantle layer Moderate Spotted euxassay_006157_15
TS23: thalamus mantle layer Strong Regionally restricted euxassay_006157_15
TS23: midbrain mantle layer Moderate Graded euxassay_006157_15
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_006157_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006157_15
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_006157_15
Specimen euxassay_006157_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006157_16
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_006157_16
TS23: cerebral cortex marginal layer Moderate Regionally restricted euxassay_006157_16
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_006157_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006157_16
TS23: thalamus mantle layer Strong Regionally restricted euxassay_006157_16
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_006157_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006157_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006157_16
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_16
TS23: pons marginal layer Moderate Regionally restricted euxassay_006157_16
Specimen euxassay_006157_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006157_17
TS23: olfactory epithelium Weak Regionally restricted euxassay_006157_17
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_006157_17
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_17
TS23: corpus striatum Moderate Regionally restricted euxassay_006157_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006157_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_006157_17
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_17
Specimen euxassay_006157_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006157_18
TS23: olfactory epithelium Weak Regionally restricted euxassay_006157_18
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_18
TS23: corpus striatum Moderate Regionally restricted euxassay_006157_18
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_006157_18
Specimen euxassay_006157_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_006157_19
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_19
TS23: corpus striatum Moderate Regionally restricted euxassay_006157_19
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006157_19
Specimen euxassay_006157_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_20
TS23: corpus striatum Moderate Regionally restricted euxassay_006157_20
Specimen euxassay_006157_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_21
TS23: corpus striatum Moderate Regionally restricted euxassay_006157_21
Specimen euxassay_006157_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: retina Moderate Regionally restricted euxassay_006157_22
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006157_22
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory