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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825377
Gene symbol: H1f6
Gene name: H1.6 linker histone, cluster member
Probe: T38514
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_012858_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: liver lobe Weak Regionally restricted euxassay_012858_01
Specimen euxassay_012858_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_02
TS23: liver lobe Weak Regionally restricted euxassay_012858_02
Specimen euxassay_012858_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_03
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_012858_03
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012858_03
TS23: liver lobe Weak Regionally restricted euxassay_012858_03
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_012858_03
Specimen euxassay_012858_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_04
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012858_04
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_012858_04
TS23: liver lobe Weak Regionally restricted euxassay_012858_04
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_012858_04
Specimen euxassay_012858_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_05
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012858_05
TS23: liver lobe Weak Regionally restricted euxassay_012858_05
TS23: renal cortex Weak Regionally restricted euxassay_012858_05
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_012858_05
Specimen euxassay_012858_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_06
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012858_06
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012858_06
TS23: liver lobe Weak Regionally restricted euxassay_012858_06
TS23: renal cortex Weak Regionally restricted euxassay_012858_06
TS23: orbito-sphenoid Weak Regionally restricted euxassay_012858_06
Specimen euxassay_012858_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_07
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012858_07
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012858_07
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012858_07
TS23: liver lobe Weak Regionally restricted euxassay_012858_07
TS23: renal cortex Weak Regionally restricted euxassay_012858_07
Specimen euxassay_012858_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_08
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_012858_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012858_08
TS23: liver lobe Weak Regionally restricted euxassay_012858_08
TS23: renal cortex Weak Regionally restricted euxassay_012858_08
Specimen euxassay_012858_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_09
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_012858_09
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012858_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012858_09
TS23: thymus primordium Moderate Regionally restricted euxassay_012858_09
TS23: liver lobe Weak Regionally restricted euxassay_012858_09
Specimen euxassay_012858_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012858_10
TS23: thymus primordium Moderate Regionally restricted euxassay_012858_10
TS23: liver lobe Weak Regionally restricted euxassay_012858_10
Specimen euxassay_012858_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_11
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_012858_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012858_11
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_012858_11
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_012858_11
TS23: thymus primordium Moderate Regionally restricted euxassay_012858_11
TS23: liver lobe Weak Regionally restricted euxassay_012858_11
Specimen euxassay_012858_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_012858_12
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012858_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_012858_12
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_012858_12
TS23: thymus primordium Moderate Regionally restricted euxassay_012858_12
TS23: liver lobe Weak Regionally restricted euxassay_012858_12
Specimen euxassay_012858_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_13
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_012858_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_012858_13
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_012858_13
TS23: liver lobe Weak Regionally restricted euxassay_012858_13
Specimen euxassay_012858_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_012858_14
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_012858_14
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_012858_14
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012858_14
TS23: liver lobe Weak Regionally restricted euxassay_012858_14
Specimen euxassay_012858_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012858_15
TS23: submandibular gland primordium Weak Spotted euxassay_012858_15
TS23: liver lobe Weak Regionally restricted euxassay_012858_15
TS23: renal cortex Weak Regionally restricted euxassay_012858_15
Specimen euxassay_012858_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_16
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_012858_16
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012858_16
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012858_16
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012858_16
TS23: liver lobe Weak Regionally restricted euxassay_012858_16
TS23: renal cortex Weak Regionally restricted euxassay_012858_16
Specimen euxassay_012858_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_17
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_012858_17
TS23: rest of cerebellum marginal layer Weak Regionally restricted euxassay_012858_17
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_012858_17
TS23: liver lobe Weak Regionally restricted euxassay_012858_17
TS23: renal cortex Weak Regionally restricted euxassay_012858_17
Specimen euxassay_012858_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_18
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012858_18
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012858_18
TS23: liver lobe Weak Regionally restricted euxassay_012858_18
TS23: renal cortex Weak Regionally restricted euxassay_012858_18
Specimen euxassay_012858_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_19
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012858_19
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_012858_19
TS23: liver lobe Weak Regionally restricted euxassay_012858_19
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_012858_19
Specimen euxassay_012858_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_20
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_012858_20
TS23: liver lobe Weak Regionally restricted euxassay_012858_20
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_012858_20
Specimen euxassay_012858_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_21
TS23: liver lobe Weak Regionally restricted euxassay_012858_21
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_012858_21
Specimen euxassay_012858_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_22
TS23: liver lobe Weak Regionally restricted euxassay_012858_22
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_012858_22
Specimen euxassay_012858_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_012858_23
TS23: liver lobe Weak Regionally restricted euxassay_012858_23
TS23: orbito-sphenoid Weak Regionally restricted euxassay_012858_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory