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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825361
Gene symbol: Hes6
Gene name: hairy and enhancer of split 6
Probe: MGC clone 18755
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006639_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_01
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_01
TS23: telencephalon ventricular layer Strong Uniform euxassay_006639_01
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_01
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_01
TS23: neural retina Strong Regionally restricted euxassay_006639_01
Specimen euxassay_006639_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_02
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_02
TS23: telencephalon ventricular layer Strong Uniform euxassay_006639_02
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_02
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_02
Specimen euxassay_006639_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_03
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_03
TS23: telencephalon ventricular layer Strong Uniform euxassay_006639_03
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_03
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_03
Specimen euxassay_006639_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_04
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_04
TS23: lower jaw molar Strong Regionally restricted euxassay_006639_04
TS23: upper jaw molar Strong Regionally restricted euxassay_006639_04
TS23: telencephalon ventricular layer Strong Uniform euxassay_006639_04
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_04
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_04
Specimen euxassay_006639_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_05
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_05
TS23: telencephalon ventricular layer Strong Uniform euxassay_006639_05
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_05
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_05
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006639_05
TS23: olfactory epithelium Strong Regionally restricted euxassay_006639_05
TS23: foot mesenchyme Strong Regionally restricted euxassay_006639_05
Specimen euxassay_006639_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_06
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_06
TS23: telencephalon ventricular layer Strong Uniform euxassay_006639_06
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_06
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_06
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006639_06
TS23: olfactory epithelium Strong Regionally restricted euxassay_006639_06
TS23: foot mesenchyme Strong Regionally restricted euxassay_006639_06
Specimen euxassay_006639_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_07
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_07
TS23: telencephalon ventricular layer Strong Uniform euxassay_006639_07
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006639_07
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_07
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_07
TS23: olfactory epithelium Strong Regionally restricted euxassay_006639_07
TS23: foot mesenchyme Strong Regionally restricted euxassay_006639_07
Specimen euxassay_006639_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_08
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_08
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_006639_08
TS23: telencephalon ventricular layer Strong Uniform euxassay_006639_08
TS23: hypothalamus ventricular layer Strong Uniform euxassay_006639_08
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_08
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_08
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006639_08
TS23: olfactory epithelium Strong Regionally restricted euxassay_006639_08
TS23: thymus primordium Strong Regionally restricted euxassay_006639_08
Specimen euxassay_006639_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_09
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_09
TS23: hypothalamus ventricular layer Strong Uniform euxassay_006639_09
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_006639_09
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_006639_09
TS23: telencephalon ventricular layer Strong Uniform euxassay_006639_09
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_09
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006639_09
TS23: olfactory epithelium Strong Regionally restricted euxassay_006639_09
TS23: thymus primordium Strong Regionally restricted euxassay_006639_09
Specimen euxassay_006639_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_10
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_10
TS23: telencephalon ventricular layer Strong Uniform euxassay_006639_10
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_006639_10
TS23: hypothalamus ventricular layer Strong Uniform euxassay_006639_10
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_10
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006639_10
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_006639_10
TS23: thymus primordium Strong Regionally restricted euxassay_006639_10
TS23: tongue muscle Moderate Regionally restricted euxassay_006639_10
TS23: trachea Moderate Regionally restricted euxassay_006639_10
Specimen euxassay_006639_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_11
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_11
TS23: telencephalon ventricular layer Strong Uniform euxassay_006639_11
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_006639_11
TS23: hypothalamus ventricular layer Strong Uniform euxassay_006639_11
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_11
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006639_11
TS23: olfactory epithelium Strong Regionally restricted euxassay_006639_11
TS23: thymus primordium Strong Regionally restricted euxassay_006639_11
TS23: tongue muscle Moderate Regionally restricted euxassay_006639_11
TS23: tail mesenchyme Strong Regionally restricted euxassay_006639_11
Specimen euxassay_006639_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_12
TS23: telencephalon ventricular layer Strong Uniform euxassay_006639_12
TS23: hypothalamus ventricular layer Strong Uniform euxassay_006639_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006639_12
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_12
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_12
TS23: olfactory epithelium Strong Regionally restricted euxassay_006639_12
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_006639_12
TS23: thymus primordium Strong Regionally restricted euxassay_006639_12
TS23: tongue muscle Moderate Regionally restricted euxassay_006639_12
TS23: tail mesenchyme Strong Regionally restricted euxassay_006639_12
Specimen euxassay_006639_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_13
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_006639_13
TS23: telencephalon ventricular layer Strong Uniform euxassay_006639_13
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_13
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006639_13
TS23: olfactory epithelium Strong Regionally restricted euxassay_006639_13
TS23: tongue muscle Weak Regionally restricted euxassay_006639_13
TS23: tail mesenchyme Strong Regionally restricted euxassay_006639_13
Specimen euxassay_006639_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_14
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_14
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_006639_14
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_14
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_006639_14
TS23: olfactory epithelium Strong Regionally restricted euxassay_006639_14
TS23: tongue muscle Weak Regionally restricted euxassay_006639_14
TS23: tail mesenchyme Strong Regionally restricted euxassay_006639_14
Specimen euxassay_006639_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_15
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_15
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_006639_15
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_006639_15
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_15
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_15
TS23: olfactory epithelium Strong Regionally restricted euxassay_006639_15
TS23: tail mesenchyme Strong Regionally restricted euxassay_006639_15
Specimen euxassay_006639_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_16
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_16
TS23: upper jaw molar Strong Regionally restricted euxassay_006639_16
TS23: lower jaw molar Strong Regionally restricted euxassay_006639_16
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_006639_16
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_16
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_16
TS23: olfactory epithelium Strong Regionally restricted euxassay_006639_16
TS23: tail mesenchyme Moderate Regionally restricted euxassay_006639_16
Specimen euxassay_006639_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_17
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_17
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_006639_17
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_17
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_17
TS23: olfactory epithelium Strong Regionally restricted euxassay_006639_17
Specimen euxassay_006639_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_18
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_18
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_006639_18
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_006639_18
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_18
Specimen euxassay_006639_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_19
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_19
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_006639_19
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_006639_19
TS23: retina Strong Regionally restricted euxassay_006639_19
Specimen euxassay_006639_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_20
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_20
TS23: telencephalon ventricular layer Strong Regionally restricted euxassay_006639_20
TS23: retina Strong Regionally restricted euxassay_006639_20
Specimen euxassay_006639_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_006639_21
TS23: head mesenchyme Moderate Regionally restricted euxassay_006639_21
TS23: foot mesenchyme Strong Regionally restricted euxassay_006639_21
TS23: retina Strong Regionally restricted euxassay_006639_21
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory