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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825360
Gene symbol: Hes5
Gene name: hes family bHLH transcription factor 5
Probe: T55074
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019477_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019477_01
Specimen euxassay_019477_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019477_02
TS23: telencephalon ventricular layer Moderate Uniform euxassay_019477_02
Specimen euxassay_019477_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019477_03
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_03
Specimen euxassay_019477_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019477_04
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_04
Specimen euxassay_019477_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_05
Specimen euxassay_019477_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_06
TS23: metanephros Moderate Regionally restricted euxassay_019477_06
TS23: vibrissa Moderate Regionally restricted euxassay_019477_06
Specimen euxassay_019477_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_07
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_07
TS23: metanephros Moderate Regionally restricted euxassay_019477_07
TS23: vibrissa Moderate Regionally restricted euxassay_019477_07
Specimen euxassay_019477_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_08
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_019477_08
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019477_08
TS23: metanephros Moderate Regionally restricted euxassay_019477_08
Specimen euxassay_019477_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_09
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_019477_09
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_09
TS23: pons ventricular layer Strong Regionally restricted euxassay_019477_09
TS23: metanephros Moderate Regionally restricted euxassay_019477_09
Specimen euxassay_019477_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_019477_10
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_10
TS23: pons ventricular layer Strong Regionally restricted euxassay_019477_10
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019477_10
TS23: intermediate grey horn Strong Regionally restricted euxassay_019477_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019477_10
Specimen euxassay_019477_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019477_11
TS23: pons ventricular layer Strong Regionally restricted euxassay_019477_11
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_11
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019477_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019477_11
Specimen euxassay_019477_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_019477_12
TS23: hypothalamus ventricular layer Strong Uniform euxassay_019477_12
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019477_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_019477_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019477_12
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019477_12
TS23: olfactory epithelium Moderate Regionally restricted euxassay_019477_12
TS23: vomeronasal organ Moderate Regionally restricted euxassay_019477_12
Specimen euxassay_019477_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_019477_13
TS23: hypothalamus ventricular layer Strong Uniform euxassay_019477_13
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_019477_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019477_13
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019477_13
Specimen euxassay_019477_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_14
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_019477_14
TS23: hypothalamus ventricular layer Strong Uniform euxassay_019477_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019477_14
TS23: pons ventricular layer Weak Regionally restricted euxassay_019477_14
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_14
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019477_14
TS23: olfactory epithelium Weak Regionally restricted euxassay_019477_14
TS23: vomeronasal organ Weak Regionally restricted euxassay_019477_14
Specimen euxassay_019477_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_15
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_019477_15
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_019477_15
TS23: hypothalamus ventricular layer Strong Uniform euxassay_019477_15
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019477_15
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019477_15
TS23: olfactory epithelium Weak Regionally restricted euxassay_019477_15
Specimen euxassay_019477_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_16
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_019477_16
TS23: diencephalon lateral wall ventricular layer Strong Uniform euxassay_019477_16
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019477_16
TS23: pons ventricular layer Strong Regionally restricted euxassay_019477_16
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_16
TS23: metanephros Weak Regionally restricted euxassay_019477_16
TS23: intermediate grey horn Weak Regionally restricted euxassay_019477_16
TS23: olfactory epithelium Weak Regionally restricted euxassay_019477_16
Specimen euxassay_019477_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_17
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_17
TS23: pons ventricular layer Strong Regionally restricted euxassay_019477_17
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019477_17
TS23: metanephros Moderate Regionally restricted euxassay_019477_17
Specimen euxassay_019477_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_18
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019477_18
TS23: pons ventricular layer Strong Regionally restricted euxassay_019477_18
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_18
TS23: metanephros Moderate Regionally restricted euxassay_019477_18
TS23: vibrissa Moderate Regionally restricted euxassay_019477_18
Specimen euxassay_019477_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_19
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_19
TS23: pons ventricular layer Strong Regionally restricted euxassay_019477_19
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019477_19
TS23: metanephros Moderate Regionally restricted euxassay_019477_19
TS23: vibrissa Moderate Regionally restricted euxassay_019477_19
Specimen euxassay_019477_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_20
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019477_20
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019477_20
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019477_20
TS23: vibrissa Moderate Regionally restricted euxassay_019477_20
Specimen euxassay_019477_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_21
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_21
Specimen euxassay_019477_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_22
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_22
Specimen euxassay_019477_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019477_23
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_23
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_019477_23
Specimen euxassay_019477_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019477_24
TS23: telencephalon ventricular layer Strong Uniform euxassay_019477_24
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_019477_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory