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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825071
Gene symbol: Gli1
Gene name: GLI-Kruppel family member GLI1
Probe: T35450
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_008919_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Moderate Regionally restricted euxassay_008919_01
TS23: humerus Weak Regionally restricted euxassay_008919_01
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_008919_01
TS23: fibula Moderate Regionally restricted euxassay_008919_01
TS23: tibia Moderate Regionally restricted euxassay_008919_01
TS23: hand Moderate Regionally restricted euxassay_008919_01
Specimen euxassay_008919_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_02
TS23: neural retina Moderate Regionally restricted euxassay_008919_02
TS23: mandible Moderate Regionally restricted euxassay_008919_02
TS23: humerus Weak Regionally restricted euxassay_008919_02
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_008919_02
TS23: hand Moderate Regionally restricted euxassay_008919_02
Specimen euxassay_008919_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_03
TS23: vibrissa Moderate Regionally restricted euxassay_008919_03
TS23: neural retina Moderate Regionally restricted euxassay_008919_03
TS23: mandible Moderate Regionally restricted euxassay_008919_03
TS23: maxilla Moderate Regionally restricted euxassay_008919_03
TS23: stomach Moderate Regionally restricted euxassay_008919_03
TS23: humerus Weak Regionally restricted euxassay_008919_03
TS23: scapula Weak Regionally restricted euxassay_008919_03
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_008919_03
TS23: femur Moderate Regionally restricted euxassay_008919_03
Specimen euxassay_008919_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_04
TS23: vibrissa Moderate Regionally restricted euxassay_008919_04
TS23: maxilla Moderate Regionally restricted euxassay_008919_04
TS23: mandible Moderate Regionally restricted euxassay_008919_04
TS23: stomach Moderate Regionally restricted euxassay_008919_04
TS23: humerus Weak Regionally restricted euxassay_008919_04
TS23: scapula Weak Regionally restricted euxassay_008919_04
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_008919_04
TS23: femur Moderate Regionally restricted euxassay_008919_04
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_008919_04
Specimen euxassay_008919_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_05
TS23: vibrissa Moderate Regionally restricted euxassay_008919_05
TS23: maxilla Weak Regionally restricted euxassay_008919_05
TS23: mandible Weak Regionally restricted euxassay_008919_05
TS23: stomach Moderate Regionally restricted euxassay_008919_05
TS23: orbito-sphenoid Weak Regionally restricted euxassay_008919_05
TS23: femur Moderate Regionally restricted euxassay_008919_05
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_008919_05
Specimen euxassay_008919_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_06
TS23: vibrissa Moderate Regionally restricted euxassay_008919_06
TS23: stomach Moderate Regionally restricted euxassay_008919_06
TS23: midgut Moderate Regionally restricted euxassay_008919_06
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_008919_06
Specimen euxassay_008919_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_07
TS23: maxilla Weak Regionally restricted euxassay_008919_07
TS23: mandible Weak Regionally restricted euxassay_008919_07
TS23: midgut Moderate Regionally restricted euxassay_008919_07
TS23: stomach Moderate Regionally restricted euxassay_008919_07
TS23: clavicle Moderate Regionally restricted euxassay_008919_07
Specimen euxassay_008919_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_08
TS23: maxilla Weak Regionally restricted euxassay_008919_08
TS23: mandible Weak Regionally restricted euxassay_008919_08
TS23: midgut Moderate Regionally restricted euxassay_008919_08
TS23: stomach Moderate Regionally restricted euxassay_008919_08
TS23: clavicle Moderate Regionally restricted euxassay_008919_08
TS23: femur Moderate Regionally restricted euxassay_008919_08
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_008919_08
Specimen euxassay_008919_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_09
TS23: axial skeleton Moderate Regionally restricted euxassay_008919_09
TS23: maxilla Weak Regionally restricted euxassay_008919_09
TS23: mandible Weak Regionally restricted euxassay_008919_09
TS23: clavicle Moderate Regionally restricted euxassay_008919_09
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_008919_09
Specimen euxassay_008919_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Moderate Regionally restricted euxassay_008919_10
TS23: maxilla Weak Regionally restricted euxassay_008919_10
TS23: mandible Weak Regionally restricted euxassay_008919_10
TS23: midgut Moderate Regionally restricted euxassay_008919_10
TS23: clavicle Moderate Regionally restricted euxassay_008919_10
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_008919_10
Specimen euxassay_008919_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Moderate Regionally restricted euxassay_008919_11
TS23: midgut Moderate Regionally restricted euxassay_008919_11
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_008919_11
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_008919_11
Specimen euxassay_008919_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Moderate Regionally restricted euxassay_008919_12
TS23: midgut Moderate Regionally restricted euxassay_008919_12
TS23: esophagus Moderate Regionally restricted euxassay_008919_12
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_008919_12
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_008919_12
Specimen euxassay_008919_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Moderate Regionally restricted euxassay_008919_13
TS23: esophagus Moderate Regionally restricted euxassay_008919_13
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_008919_13
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_008919_13
Specimen euxassay_008919_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Moderate Regionally restricted euxassay_008919_14
TS23: esophagus Weak Regionally restricted euxassay_008919_14
Specimen euxassay_008919_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Moderate Regionally restricted euxassay_008919_15
TS23: maxilla Weak Regionally restricted euxassay_008919_15
TS23: mandible Weak Regionally restricted euxassay_008919_15
TS23: clavicle Moderate Regionally restricted euxassay_008919_15
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_008919_15
Specimen euxassay_008919_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Moderate Regionally restricted euxassay_008919_16
TS23: maxilla Weak Regionally restricted euxassay_008919_16
TS23: mandible Weak Regionally restricted euxassay_008919_16
TS23: clavicle Moderate Regionally restricted euxassay_008919_16
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_008919_16
Specimen euxassay_008919_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: axial skeleton Moderate Regionally restricted euxassay_008919_17
TS23: maxilla Weak Regionally restricted euxassay_008919_17
TS23: mandible Weak Regionally restricted euxassay_008919_17
TS23: clavicle Moderate Regionally restricted euxassay_008919_17
TS23: hand Moderate Regionally restricted euxassay_008919_17
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_008919_17
Specimen euxassay_008919_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_18
TS23: maxilla Weak Regionally restricted euxassay_008919_18
TS23: mandible Weak Regionally restricted euxassay_008919_18
TS23: hand Moderate Regionally restricted euxassay_008919_18
Specimen euxassay_008919_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_19
TS23: vibrissa Moderate Regionally restricted euxassay_008919_19
TS23: maxilla Moderate Regionally restricted euxassay_008919_19
TS23: mandible Moderate Regionally restricted euxassay_008919_19
TS23: orbito-sphenoid Weak Regionally restricted euxassay_008919_19
TS23: femur Weak Regionally restricted euxassay_008919_19
TS23: hand Moderate Regionally restricted euxassay_008919_19
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_008919_19
Specimen euxassay_008919_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_20
TS23: vibrissa Moderate Regionally restricted euxassay_008919_20
TS23: mandible Moderate Regionally restricted euxassay_008919_20
TS23: maxilla Moderate Regionally restricted euxassay_008919_20
TS23: humerus Weak Regionally restricted euxassay_008919_20
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_008919_20
TS23: femur Weak Regionally restricted euxassay_008919_20
TS23: hand Moderate Regionally restricted euxassay_008919_20
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_008919_20
Specimen euxassay_008919_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_21
TS23: vibrissa Moderate Regionally restricted euxassay_008919_21
TS23: neural retina Moderate Regionally restricted euxassay_008919_21
TS23: mandible Moderate Regionally restricted euxassay_008919_21
TS23: humerus Weak Regionally restricted euxassay_008919_21
TS23: scapula Weak Regionally restricted euxassay_008919_21
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_008919_21
TS23: femur Weak Regionally restricted euxassay_008919_21
TS23: hand Weak Regionally restricted euxassay_008919_21
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_008919_21
Specimen euxassay_008919_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_22
TS23: neural retina Moderate Regionally restricted euxassay_008919_22
TS23: mandible Moderate Regionally restricted euxassay_008919_22
TS23: humerus Weak Regionally restricted euxassay_008919_22
TS23: scapula Weak Regionally restricted euxassay_008919_22
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_008919_22
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_008919_22
TS23: femur Weak Regionally restricted euxassay_008919_22
TS23: hand Moderate Regionally restricted euxassay_008919_22
Specimen euxassay_008919_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rib Moderate Regionally restricted euxassay_008919_23
TS23: neural retina Moderate Regionally restricted euxassay_008919_23
TS23: humerus Weak Regionally restricted euxassay_008919_23
TS23: scapula Weak Regionally restricted euxassay_008919_23
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_008919_23
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_008919_23
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_008919_23
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_008919_23
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_008919_23
TS23: radius Moderate Regionally restricted euxassay_008919_23
TS23: hand Moderate Regionally restricted euxassay_008919_23
Specimen euxassay_008919_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: humerus Weak Regionally restricted euxassay_008919_24
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_008919_24
TS23: fibula Moderate Regionally restricted euxassay_008919_24
TS23: tibia Moderate Regionally restricted euxassay_008919_24
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_008919_24
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_008919_24
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_008919_24
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_008919_24
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_008919_24
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_008919_24
TS23: hindlimb digit 1 phalanx Moderate Regionally restricted euxassay_008919_24
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_008919_24
TS23: ulna Moderate Regionally restricted euxassay_008919_24
TS23: radius Moderate Regionally restricted euxassay_008919_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory