About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4824900
Gene symbol: Foxd1
Gene name: forkhead box D1
Probe: T50405
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_018971_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_01
Specimen euxassay_018971_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_02
Specimen euxassay_018971_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain meninges Moderate Regionally restricted euxassay_018971_03
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_03
Specimen euxassay_018971_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_04
TS23: hindbrain meninges Moderate Regionally restricted euxassay_018971_04
Specimen euxassay_018971_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018971_05
TS23: hindbrain meninges Moderate Regionally restricted euxassay_018971_05
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_05
Specimen euxassay_018971_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018971_06
TS23: hindbrain meninges Moderate Regionally restricted euxassay_018971_06
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_06
Specimen euxassay_018971_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018971_07
TS23: hindbrain meninges Moderate Regionally restricted euxassay_018971_07
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_07
Specimen euxassay_018971_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018971_08
TS23: hindbrain meninges Moderate Regionally restricted euxassay_018971_08
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_08
TS23: renal cortex Strong Regionally restricted euxassay_018971_08
TS23: axial skeleton Weak Regionally restricted euxassay_018971_08
Specimen euxassay_018971_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018971_09
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_09
TS23: hindbrain meninges Moderate Regionally restricted euxassay_018971_09
TS23: renal cortex Strong Regionally restricted euxassay_018971_09
TS23: adrenal cortex Weak Regionally restricted euxassay_018971_09
TS23: axial skeleton Weak Regionally restricted euxassay_018971_09
Specimen euxassay_018971_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Weak Regionally restricted euxassay_018971_10
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_10
TS23: renal cortex Strong Regionally restricted euxassay_018971_10
TS23: adrenal cortex Weak Regionally restricted euxassay_018971_10
TS23: axial skeleton Moderate Regionally restricted euxassay_018971_10
Specimen euxassay_018971_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_11
TS23: renal cortex Strong Regionally restricted euxassay_018971_11
TS23: adrenal cortex Weak Regionally restricted euxassay_018971_11
TS23: tongue Weak Regionally restricted euxassay_018971_11
TS23: axial skeleton Moderate Regionally restricted euxassay_018971_11
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_018971_11
Specimen euxassay_018971_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_12
TS23: renal cortex Strong Regionally restricted euxassay_018971_12
TS23: tongue Weak Regionally restricted euxassay_018971_12
TS23: axial skeleton Moderate Regionally restricted euxassay_018971_12
TS23: diencephalon lateral wall ventricular layer Weak Regionally restricted euxassay_018971_12
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_018971_12
Specimen euxassay_018971_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_13
TS23: tongue Moderate Regionally restricted euxassay_018971_13
TS23: nephric duct of male Moderate Regionally restricted euxassay_018971_13
TS23: axial skeleton Moderate Regionally restricted euxassay_018971_13
Specimen euxassay_018971_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_14
TS23: tongue Moderate Regionally restricted euxassay_018971_14
TS23: axial skeleton Moderate Regionally restricted euxassay_018971_14
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_018971_14
Specimen euxassay_018971_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_15
TS23: tongue Weak Regionally restricted euxassay_018971_15
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_018971_15
TS23: upper lip Moderate Regionally restricted euxassay_018971_15
Specimen euxassay_018971_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_16
TS23: tongue Weak Regionally restricted euxassay_018971_16
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_018971_16
TS23: upper lip Weak Regionally restricted euxassay_018971_16
Specimen euxassay_018971_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_17
TS23: tongue Moderate Regionally restricted euxassay_018971_17
TS23: nephric duct of male Moderate Regionally restricted euxassay_018971_17
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_018971_17
TS23: axial skeleton Moderate Regionally restricted euxassay_018971_17
Specimen euxassay_018971_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_18
TS23: renal cortex Strong Regionally restricted euxassay_018971_18
TS23: adrenal cortex Weak Regionally restricted euxassay_018971_18
TS23: tongue Moderate Regionally restricted euxassay_018971_18
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_018971_18
TS23: axial skeleton Moderate Regionally restricted euxassay_018971_18
Specimen euxassay_018971_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_19
TS23: hindbrain meninges Moderate Regionally restricted euxassay_018971_19
TS23: renal cortex Strong Regionally restricted euxassay_018971_19
TS23: adrenal cortex Weak Regionally restricted euxassay_018971_19
TS23: axial skeleton Moderate Regionally restricted euxassay_018971_19
Specimen euxassay_018971_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain meninges Moderate Regionally restricted euxassay_018971_20
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_20
TS23: renal cortex Strong Regionally restricted euxassay_018971_20
TS23: adrenal cortex Weak Regionally restricted euxassay_018971_20
Specimen euxassay_018971_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_018971_21
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_21
TS23: hindbrain meninges Moderate Regionally restricted euxassay_018971_21
TS23: renal cortex Strong Regionally restricted euxassay_018971_21
TS23: adrenal cortex Weak Regionally restricted euxassay_018971_21
Specimen euxassay_018971_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018971_22
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_22
TS23: renal cortex Strong Regionally restricted euxassay_018971_22
Specimen euxassay_018971_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018971_23
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_23
TS23: renal cortex Strong Regionally restricted euxassay_018971_23
Specimen euxassay_018971_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018971_24
TS23: telencephalon meninges Moderate Regionally restricted euxassay_018971_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory