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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4824731
Gene symbol: Ccser1
Gene name: coiled-coil serine rich 1
Probe: T39781
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_016073_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_01
Specimen euxassay_016073_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_02
Specimen euxassay_016073_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_03
Specimen euxassay_016073_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_04
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_04
TS23: facial ganglion Weak Regionally restricted euxassay_016073_04
Specimen euxassay_016073_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_05
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_05
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_05
TS23: facial ganglion Moderate Regionally restricted euxassay_016073_05
Specimen euxassay_016073_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_06
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_06
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_06
Specimen euxassay_016073_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016073_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016073_07
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_07
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_07
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016073_07
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_016073_07
Specimen euxassay_016073_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016073_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016073_08
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016073_08
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_08
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_08
TS23: cervical ganglion Weak Regionally restricted euxassay_016073_08
Specimen euxassay_016073_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016073_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016073_09
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_09
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_09
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016073_09
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016073_09
TS23: cervical ganglion Weak Regionally restricted euxassay_016073_09
TS23: metanephros Weak Regionally restricted euxassay_016073_09
Specimen euxassay_016073_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016073_10
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_10
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_10
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016073_10
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016073_10
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_016073_10
TS23: metanephros Weak Regionally restricted euxassay_016073_10
Specimen euxassay_016073_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016073_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016073_11
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_11
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_11
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016073_11
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016073_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_016073_11
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_016073_11
Specimen euxassay_016073_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016073_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_12
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_12
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_12
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016073_12
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016073_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_016073_12
TS23: trachea Weak Regionally restricted euxassay_016073_12
Specimen euxassay_016073_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_13
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016073_13
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_016073_13
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_016073_13
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016073_13
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_13
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_016073_13
TS23: thoracic ganglion Weak Regionally restricted euxassay_016073_13
TS23: trachea Weak Regionally restricted euxassay_016073_13
Specimen euxassay_016073_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_14
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016073_14
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_016073_14
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_016073_14
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_14
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_14
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016073_14
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_016073_14
TS23: thoracic ganglion Weak Regionally restricted euxassay_016073_14
Specimen euxassay_016073_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_15
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016073_15
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_016073_15
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_016073_15
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016073_15
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016073_15
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_15
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_15
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_016073_15
Specimen euxassay_016073_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_16
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_016073_16
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_016073_16
TS23: midbrain mantle layer Weak Regionally restricted euxassay_016073_16
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_16
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_16
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016073_16
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016073_16
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_016073_16
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_016073_16
TS23: cervical ganglion Weak Regionally restricted euxassay_016073_16
Specimen euxassay_016073_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016073_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016073_17
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016073_17
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_016073_17
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_17
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_17
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_016073_17
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_016073_17
Specimen euxassay_016073_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016073_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_18
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_18
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016073_18
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_18
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_016073_18
TS23: metanephros Weak Regionally restricted euxassay_016073_18
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_016073_18
Specimen euxassay_016073_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_19
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_016073_19
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016073_19
TS23: pons mantle layer Weak Regionally restricted euxassay_016073_19
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_19
TS23: medulla oblongata alar plate mantle layer Weak Regionally restricted euxassay_016073_19
TS23: metanephros Weak Regionally restricted euxassay_016073_19
TS23: facial ganglion Moderate Regionally restricted euxassay_016073_19
Specimen euxassay_016073_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_20
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_20
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_20
TS23: facial ganglion Moderate Regionally restricted euxassay_016073_20
Specimen euxassay_016073_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_21
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016073_21
TS23: rest of cerebellum mantle layer Weak Regionally restricted euxassay_016073_21
Specimen euxassay_016073_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_22
TS23: telencephalon marginal layer Moderate Regionally restricted euxassay_016073_22
Specimen euxassay_016073_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_016073_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory