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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4824626
Gene symbol: Esx1
Gene name: extraembryonic, spermatogenesis, homeobox 1
Probe: T45066
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_016592_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cranial muscle Weak Regionally restricted euxassay_016592_01
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_016592_01
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_016592_01
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_016592_01
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_016592_01
Specimen euxassay_016592_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cranial muscle Weak Regionally restricted euxassay_016592_02
TS23: orbito-sphenoid Weak Regionally restricted euxassay_016592_02
TS23: hindlimb digit 1 phalanx Moderate Regionally restricted euxassay_016592_02
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_016592_02
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_016592_02
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_016592_02
Specimen euxassay_016592_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_016592_03
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_016592_03
TS23: cranial muscle Moderate Regionally restricted euxassay_016592_03
TS23: foot mesenchyme Moderate Regionally restricted euxassay_016592_03
TS23: trigeminal ganglion Moderate Single cells euxassay_016592_03
Specimen euxassay_016592_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_04
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_016592_04
TS23: trigeminal ganglion Moderate Single cells euxassay_016592_04
TS23: facial ganglion Moderate Single cells euxassay_016592_04
Specimen euxassay_016592_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_016592_05
TS23: orbito-sphenoid Weak Regionally restricted euxassay_016592_05
TS23: trigeminal ganglion Moderate Single cells euxassay_016592_05
TS23: facial ganglion Moderate Single cells euxassay_016592_05
Specimen euxassay_016592_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_016592_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_06
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016592_06
TS23: trigeminal ganglion Moderate Single cells euxassay_016592_06
TS23: dorsal root ganglion Weak Single cells euxassay_016592_06
Specimen euxassay_016592_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_016592_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016592_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016592_07
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016592_07
TS23: trigeminal ganglion Weak Single cells euxassay_016592_07
TS23: dorsal root ganglion Weak Single cells euxassay_016592_07
Specimen euxassay_016592_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_016592_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016592_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016592_08
TS23: ventral grey horn Moderate Regionally restricted euxassay_016592_08
TS23: trigeminal ganglion Weak Single cells euxassay_016592_08
TS23: dorsal root ganglion Weak Single cells euxassay_016592_08
Specimen euxassay_016592_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_016592_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016592_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016592_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016592_09
TS23: ventral grey horn Moderate Regionally restricted euxassay_016592_09
TS23: dorsal root ganglion Weak Single cells euxassay_016592_09
Specimen euxassay_016592_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_016592_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_10
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016592_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016592_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016592_10
TS23: ventral grey horn Moderate Regionally restricted euxassay_016592_10
TS23: tail mesenchyme Moderate Regionally restricted euxassay_016592_10
Specimen euxassay_016592_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_016592_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016592_11
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016592_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016592_11
TS23: ventral grey horn Moderate Regionally restricted euxassay_016592_11
TS23: tail mesenchyme Moderate Regionally restricted euxassay_016592_11
Specimen euxassay_016592_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016592_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016592_12
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016592_12
TS23: ventral grey horn Moderate Regionally restricted euxassay_016592_12
TS23: tail mesenchyme Moderate Regionally restricted euxassay_016592_12
Specimen euxassay_016592_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016592_13
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016592_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016592_13
TS23: ventral grey horn Moderate Regionally restricted euxassay_016592_13
TS23: tail mesenchyme Moderate Regionally restricted euxassay_016592_13
Specimen euxassay_016592_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_016592_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016592_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016592_14
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016592_14
TS23: ventral grey horn Moderate Regionally restricted euxassay_016592_14
TS23: tail mesenchyme Moderate Regionally restricted euxassay_016592_14
TS23: dorsal root ganglion Weak Single cells euxassay_016592_14
Specimen euxassay_016592_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_016592_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_15
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016592_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016592_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016592_15
TS23: ventral grey horn Moderate Regionally restricted euxassay_016592_15
TS23: tail mesenchyme Moderate Regionally restricted euxassay_016592_15
TS23: dorsal root ganglion Weak Single cells euxassay_016592_15
Specimen euxassay_016592_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_016592_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016592_16
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016592_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016592_16
TS23: ventral grey horn Moderate Regionally restricted euxassay_016592_16
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016592_16
TS23: trigeminal ganglion Weak Single cells euxassay_016592_16
TS23: dorsal root ganglion Weak Single cells euxassay_016592_16
Specimen euxassay_016592_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_016592_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_17
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_016592_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_016592_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_016592_17
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016592_17
TS23: trigeminal ganglion Weak Single cells euxassay_016592_17
Specimen euxassay_016592_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_016592_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_18
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_016592_18
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016592_18
TS23: trigeminal ganglion Weak Single cells euxassay_016592_18
Specimen euxassay_016592_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_016592_19
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_19
TS23: pons mantle layer Moderate Regionally restricted euxassay_016592_19
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_016592_19
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016592_19
TS23: trigeminal ganglion Weak Single cells euxassay_016592_19
TS23: facial ganglion Weak Single cells euxassay_016592_19
Specimen euxassay_016592_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_016592_20
TS23: cranial muscle Weak Regionally restricted euxassay_016592_20
TS23: orbito-sphenoid Moderate Regionally restricted euxassay_016592_20
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_016592_20
TS23: trigeminal ganglion Weak Single cells euxassay_016592_20
TS23: facial ganglion Weak Single cells euxassay_016592_20
Specimen euxassay_016592_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cranial muscle Moderate Regionally restricted euxassay_016592_21
TS23: trigeminal ganglion Weak Single cells euxassay_016592_21
Specimen euxassay_016592_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cranial muscle Moderate Regionally restricted euxassay_016592_22
Specimen euxassay_016592_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cranial muscle Moderate Regionally restricted euxassay_016592_23
Specimen euxassay_016592_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cranial muscle Weak Regionally restricted euxassay_016592_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory