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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4824486
Gene symbol: Efnb1
Gene name: ephrin B1
Probe: MH548 probe 396
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_018017_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_018017_01
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_018017_01
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_01
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_018017_01
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_018017_01
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_018017_01
TS23: hand mesenchyme Moderate Regionally restricted euxassay_018017_01
TS23: lung Weak Regionally restricted euxassay_018017_01
Specimen euxassay_018017_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_018017_02
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_02
TS23: hindlimb digit 5 phalanx Weak Regionally restricted euxassay_018017_02
TS23: hindlimb digit 4 phalanx Weak Regionally restricted euxassay_018017_02
TS23: hindlimb digit 3 phalanx Weak Regionally restricted euxassay_018017_02
TS23: hand mesenchyme Weak Regionally restricted euxassay_018017_02
TS23: lung Weak Regionally restricted euxassay_018017_02
Specimen euxassay_018017_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018017_03
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_03
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_03
TS23: foot mesenchyme Weak Regionally restricted euxassay_018017_03
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_018017_03
TS23: hindlimb digit 3 phalanx Weak Regionally restricted euxassay_018017_03
TS23: lung Weak Regionally restricted euxassay_018017_03
Specimen euxassay_018017_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_018017_04
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_04
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_04
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_018017_04
TS23: foot mesenchyme Moderate Regionally restricted euxassay_018017_04
TS23: lung Weak Regionally restricted euxassay_018017_04
Specimen euxassay_018017_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_018017_05
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_05
TS23: metanephros Moderate Regionally restricted euxassay_018017_05
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_05
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_018017_05
TS23: lower jaw molar Moderate Regionally restricted euxassay_018017_05
TS23: upper jaw molar Moderate Regionally restricted euxassay_018017_05
TS23: lung Weak Regionally restricted euxassay_018017_05
Specimen euxassay_018017_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_018017_06
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_06
TS23: metanephros Strong Regionally restricted euxassay_018017_06
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_06
TS23: pons ventricular layer Moderate Regionally restricted euxassay_018017_06
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_018017_06
TS23: upper jaw molar Moderate Regionally restricted euxassay_018017_06
TS23: lower jaw molar Moderate Regionally restricted euxassay_018017_06
TS23: lung Weak Regionally restricted euxassay_018017_06
Specimen euxassay_018017_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_07
TS23: metanephros Moderate Regionally restricted euxassay_018017_07
TS23: adrenal cortex Weak Regionally restricted euxassay_018017_07
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_07
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_018017_07
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_018017_07
TS23: pons ventricular layer Moderate Regionally restricted euxassay_018017_07
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_018017_07
TS23: palatal shelf Moderate Regionally restricted euxassay_018017_07
TS23: lung Weak Regionally restricted euxassay_018017_07
Specimen euxassay_018017_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_08
TS23: metanephros Moderate Regionally restricted euxassay_018017_08
TS23: adrenal cortex Weak Regionally restricted euxassay_018017_08
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_08
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_018017_08
TS23: pons ventricular layer Moderate Regionally restricted euxassay_018017_08
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_018017_08
TS23: palatal shelf Moderate Regionally restricted euxassay_018017_08
TS23: midgut Weak Regionally restricted euxassay_018017_08
TS23: lung Weak Regionally restricted euxassay_018017_08
Specimen euxassay_018017_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_09
TS23: metanephros Moderate Regionally restricted euxassay_018017_09
TS23: adrenal cortex Weak Regionally restricted euxassay_018017_09
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_09
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_018017_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018017_09
TS23: pons ventricular layer Strong Regionally restricted euxassay_018017_09
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_018017_09
TS23: medulla oblongata sulcus limitans Moderate Regionally restricted euxassay_018017_09
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_018017_09
TS23: midgut Weak Regionally restricted euxassay_018017_09
TS23: lung Weak Regionally restricted euxassay_018017_09
Specimen euxassay_018017_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_10
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018017_10
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_018017_10
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018017_10
TS23: midgut Weak Regionally restricted euxassay_018017_10
TS23: lung Weak Regionally restricted euxassay_018017_10
Specimen euxassay_018017_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_11
TS23: pons ventricular layer Weak Regionally restricted euxassay_018017_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_018017_11
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_018017_11
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_018017_11
TS23: cerebral internal capsule Moderate Regionally restricted euxassay_018017_11
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_018017_11
TS23: nephric duct of male Weak Regionally restricted euxassay_018017_11
TS23: bladder Weak Regionally restricted euxassay_018017_11
TS23: midgut Weak Regionally restricted euxassay_018017_11
TS23: lung Weak Regionally restricted euxassay_018017_11
Specimen euxassay_018017_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_12
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_12
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_018017_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_018017_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_018017_12
TS23: pons ventricular layer Moderate Regionally restricted euxassay_018017_12
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_018017_12
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_018017_12
TS23: bladder Weak Regionally restricted euxassay_018017_12
TS23: midgut Weak Regionally restricted euxassay_018017_12
TS23: lung Weak Regionally restricted euxassay_018017_12
Specimen euxassay_018017_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_13
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_018017_13
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018017_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_018017_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_018017_13
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_018017_13
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_018017_13
TS23: palatal shelf Moderate Regionally restricted euxassay_018017_13
TS23: bladder Weak Regionally restricted euxassay_018017_13
TS23: upper jaw incisor Moderate Regionally restricted euxassay_018017_13
TS23: lower jaw incisor Moderate Regionally restricted euxassay_018017_13
TS23: midgut Weak Regionally restricted euxassay_018017_13
TS23: lung Weak Regionally restricted euxassay_018017_13
Specimen euxassay_018017_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_14
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_14
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_018017_14
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_018017_14
TS23: pons ventricular layer Weak Regionally restricted euxassay_018017_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018017_14
TS23: nephric duct of male Weak Regionally restricted euxassay_018017_14
TS23: bladder Weak Regionally restricted euxassay_018017_14
TS23: upper jaw incisor Weak Regionally restricted euxassay_018017_14
TS23: lower jaw incisor Weak Regionally restricted euxassay_018017_14
TS23: midgut Weak Regionally restricted euxassay_018017_14
TS23: lung Weak Regionally restricted euxassay_018017_14
Specimen euxassay_018017_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_15
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_15
TS23: olfactory cortex ventricular layer Strong Uniform euxassay_018017_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018017_15
TS23: pons ventricular layer Moderate Regionally restricted euxassay_018017_15
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_018017_15
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018017_15
TS23: midgut Weak Regionally restricted euxassay_018017_15
TS23: lung Weak Regionally restricted euxassay_018017_15
Specimen euxassay_018017_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_16
TS23: metanephros Moderate Regionally restricted euxassay_018017_16
TS23: adrenal cortex Weak Regionally restricted euxassay_018017_16
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_16
TS23: pons ventricular layer Moderate Regionally restricted euxassay_018017_16
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018017_16
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_018017_16
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018017_16
TS23: midgut Weak Regionally restricted euxassay_018017_16
TS23: lung Weak Regionally restricted euxassay_018017_16
Specimen euxassay_018017_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018017_17
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_17
TS23: metanephros Strong Regionally restricted euxassay_018017_17
TS23: adrenal cortex Moderate Regionally restricted euxassay_018017_17
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_17
TS23: pons ventricular layer Strong Regionally restricted euxassay_018017_17
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_018017_17
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_018017_17
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_018017_17
TS23: upper jaw molar Moderate Regionally restricted euxassay_018017_17
TS23: lower jaw molar Moderate Regionally restricted euxassay_018017_17
TS23: midgut Weak Regionally restricted euxassay_018017_17
TS23: stomach Weak Regionally restricted euxassay_018017_17
TS23: lung Weak Regionally restricted euxassay_018017_17
Specimen euxassay_018017_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018017_18
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_18
TS23: metanephros Strong Regionally restricted euxassay_018017_18
TS23: adrenal cortex Weak Regionally restricted euxassay_018017_18
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_18
TS23: pons ventricular layer Strong Regionally restricted euxassay_018017_18
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_018017_18
TS23: dorsal root ganglion Weak Regionally restricted euxassay_018017_18
TS23: foot mesenchyme Moderate Regionally restricted euxassay_018017_18
TS23: upper jaw molar Moderate Regionally restricted euxassay_018017_18
TS23: lower jaw molar Moderate Regionally restricted euxassay_018017_18
TS23: stomach Weak Regionally restricted euxassay_018017_18
TS23: lung Weak Regionally restricted euxassay_018017_18
Specimen euxassay_018017_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018017_19
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_19
TS23: metanephros Moderate Regionally restricted euxassay_018017_19
TS23: adrenal cortex Weak Regionally restricted euxassay_018017_19
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_19
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_018017_19
TS23: pons ventricular layer Moderate Regionally restricted euxassay_018017_19
TS23: foot mesenchyme Moderate Regionally restricted euxassay_018017_19
TS23: stomach Weak Regionally restricted euxassay_018017_19
TS23: lung Weak Regionally restricted euxassay_018017_19
Specimen euxassay_018017_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_018017_20
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_20
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_20
TS23: hindlimb digit 1 phalanx Weak Regionally restricted euxassay_018017_20
TS23: hindlimb digit 2 phalanx Weak Regionally restricted euxassay_018017_20
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_018017_20
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_018017_20
TS23: stomach Weak Regionally restricted euxassay_018017_20
TS23: lung Weak Regionally restricted euxassay_018017_20
Specimen euxassay_018017_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Moderate Regionally restricted euxassay_018017_21
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_21
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_21
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_018017_21
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_018017_21
TS23: stomach Weak Regionally restricted euxassay_018017_21
TS23: lung Weak Regionally restricted euxassay_018017_21
Specimen euxassay_018017_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_22
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_22
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_018017_22
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_018017_22
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_018017_22
TS23: stomach Weak Regionally restricted euxassay_018017_22
TS23: lung Weak Regionally restricted euxassay_018017_22
Specimen euxassay_018017_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_23
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_23
TS23: hand mesenchyme Moderate Regionally restricted euxassay_018017_23
TS23: stomach Weak Regionally restricted euxassay_018017_23
TS23: lung Weak Regionally restricted euxassay_018017_23
Specimen euxassay_018017_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Weak Regionally restricted euxassay_018017_24
TS23: telencephalon ventricular layer Strong Uniform euxassay_018017_24
TS23: hand mesenchyme Moderate Regionally restricted euxassay_018017_24
TS23: stomach Weak Regionally restricted euxassay_018017_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory